Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_H17
(422 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.39
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 28 0.69
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 1.2
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 27 1.2
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 2.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 2.8
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 2.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 2.8
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 4.8
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 6.4
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 24 8.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 24 8.5
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 0.39
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -3
Query: 108 PPLLAPTAGSRRAHRPPPRTPCGNRAPPSTPPCA 7
PP L P+A PP P G A P PP A
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSA 453
Score = 25.0 bits (52), Expect = 4.8
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Frame = -3
Query: 141 SLPSTGTLQRAPPLLAPTAGSRRAHRPPPRTP---------CGNRAPPSTPP 13
S PSTG R PP L+ + PPP P GN + STPP
Sbjct: 368 SAPSTG---RQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPP 416
Score = 24.2 bits (50), Expect = 8.5
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = -3
Query: 141 SLPSTGTLQRAPPLLAPTAGSRRAHRPPPRTPCGNRAPPSTPPCA 7
S+P + APP P + +PPP + + P PP A
Sbjct: 350 SIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA 394
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.9 bits (59), Expect = 0.69
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 111 APPLLAPTAGSRRAHRPPPRTPCGNRAPPSTPP 13
APP APT + H PPP P + PS PP
Sbjct: 730 APPTPAPTPAVK--HHPPP-PPVRSSISPSMPP 759
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 1.2
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = -3
Query: 150 HLSSLPSTGTLQRAPPLL-APTAGSR-RAHRPPPRTPCGNRAPPSTPP 13
H S P APP + APT + PPP P PPS PP
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 27.1 bits (57), Expect = 1.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -3
Query: 114 RAPPLLAPTAGSRRAHRPPPR-TPCGNRAPPSTPP 13
R PLL P +GS + P P TP PP+ PP
Sbjct: 1016 RVKPLLPPRSGSSSSGVPAPNLTPV--NVPPTPPP 1048
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 2.1
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +2
Query: 8 AHGGVEGGARLPHGVRGGGLCARRLPAVGARSGGARCSVPVLGSEERWWWAPLAPGRD 181
A GG GGAR G RGG R + G R GGA+ V+ R +A G++
Sbjct: 35 ARGGGRGGARGGRGGRGGARGGRG-GSSGGR-GGAKGGAKVIIEPHRHAGVFIARGKE 90
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 2.8
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = -3
Query: 135 PSTGTLQRAPPLLAPTAGSRRAHRPPPRTPCGNRAPPSTPP 13
PS G PP AP + A PP P +APP P
Sbjct: 1203 PSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTA-KAPPVPAP 1242
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 2.8
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +2
Query: 2 HEAHGGVEGGARLPHGVRGGGLCARRLPAVGARSGGARCSVPVLG 136
H +G G A L GVR G P +GAR G V LG
Sbjct: 2853 HILYGVTAGAASLYTGVRSGVRGLALQPIIGARRNGLPGLVKGLG 2897
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 2.8
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = -3
Query: 108 PPLLAPTAGSRRAHRPPPRTPCGNRAPPSTPP 13
P ++ PT PPP G PP PP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 4.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 162 GAHHHLSSLPSTGTLQRAPPLLAPTAGSR 76
G+ + S+ P+ GT ++ PTAG+R
Sbjct: 242 GSELYTSTFPANGTTSGTVEVVIPTAGTR 270
Score = 25.0 bits (52), Expect = 4.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 162 GAHHHLSSLPSTGTLQRAPPLLAPTAGSR 76
G+ + S+ P+ GT ++ PTAG+R
Sbjct: 382 GSELYTSTFPANGTTSGTVEVVIPTAGTR 410
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 24.6 bits (51), Expect = 6.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 117 QRAPPLLAPTAGSRRAHRPPPRTPCGNRAPPSTP 16
QR+P A T G+ H PR+P +RA P
Sbjct: 745 QRSPLASAKTNGNFTFHAELPRSPFSSRANNINP 778
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 24.2 bits (50), Expect = 8.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 162 GAHHHLSSLPSTGTLQRAPPLLAPTAGS 79
G+ + S+ P+ GT ++APTAG+
Sbjct: 885 GSVGYTSTFPAQGTTSGTVEIVAPTAGT 912
Score = 24.2 bits (50), Expect = 8.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 162 GAHHHLSSLPSTGTLQRAPPLLAPTAGS 79
G+ + S+ P+ GT ++APTAG+
Sbjct: 955 GSVGYTSTFPAQGTTSGTVEIVAPTAGT 982
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.2 bits (50), Expect = 8.5
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -3
Query: 144 SSLPSTG-TLQRAPPLLAPTAGSRRAHRPPPRTPCGNRAPPSTPPCAS 4
+S+P TG + P + PT+ S + PPP + S P S
Sbjct: 289 TSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTS 336
Score = 24.2 bits (50), Expect = 8.5
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = -3
Query: 144 SSLPSTG-TLQRAPPLLAPTAGSRRAHRPPP--RTPCGNRAPPSTPPCASC 1
+S+P TG + P + PT+ S + PPP + G + P SC
Sbjct: 343 TSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSC 393
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,563,937
Number of Sequences: 5004
Number of extensions: 30542
Number of successful extensions: 115
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -