Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H17
         (422 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   1.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   3.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   4.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.5  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 353 IQWSVIICVKLFKFCKIIIF 294
           I WS  +C+ L     +IIF
Sbjct: 397 IGWSAFLCISLVYIIMLIIF 416



 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 416 IFMICSFLIFIFGLCFFPTESIQWSVIICVKLFKFC 309
           +F+I + L+    +CF   +    S +  +KL+ FC
Sbjct: 11  LFVIINVLLHGQVICFVCKDITSTSALYRLKLYLFC 46


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 113 EHLRFSLPRQGAGEHTGRRRGHRAVTAHRPQRHR 12
           E+L+FS PR  A          + +T H   + R
Sbjct: 105 EYLKFSYPRMRAPSFICENETRQGLTLHYRSKRR 138


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 404 CSFLIFIFGLCFFPTESIQWSVIICVK 324
           CS  + IF       E   W+V+ CV+
Sbjct: 288 CSLFVVIFHFAHPREEFNHWTVMRCVQ 314


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = -3

Query: 156  HHHLSSLPSTGTLQRAPPLLAPTAGSRRAHRPPPR 52
            + H  S  S G          P +GS     PPPR
Sbjct: 1831 YDHYGSRGSVGRRSVGSARNIPVSGSPEPPPPPPR 1865


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,631
Number of Sequences: 438
Number of extensions: 2215
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)