Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H16
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   5.5  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    25   7.2  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   7.2  

>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 484 SSVVNKVRLYVTIL*YTQ*LSYIIVICTKS*IRLLYFINTLAVC--PRLRPRFVYSSLHL 311
           S + N++  ++     T     ++V C+   I LL+F   + VC  PR   +++Y S H 
Sbjct: 604 SQIFNRLSFFLENTNQTAPDDSVLVRCSSKSIGLLFFFPLVKVCGVPRDTLQWLYFSNHY 663

Query: 310 IF 305
            F
Sbjct: 664 PF 665


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 61  NFDGTFFGR*LKLLRVTWYSIGI-GYSTFH 147
           N+D   FG+ L+LL+ T Y++   G S FH
Sbjct: 294 NYDCQTFGQVLELLQSTIYAVDTNGQSIFH 323


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +3

Query: 174 KKIKTQKIEYNPIQCTVSQVSAWIYEK---YFILLFITKKIL 290
           + I     E  PI C++ Q+  W+ EK   + + +F +K IL
Sbjct: 777 QNINMSIFEAFPIACSLQQIEHWVNEKVASHLMSVFPSKVIL 818


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,221
Number of Sequences: 5004
Number of extensions: 42608
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)