Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H16
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-2|AAC17653.1|  225|Caenorhabditis elegans Hypothetical ...    29   2.9  
AL032658-3|CAA21745.1|  152|Caenorhabditis elegans Hypothetical ...    28   5.0  

>AF067608-2|AAC17653.1|  225|Caenorhabditis elegans Hypothetical
           protein B0511.5 protein.
          Length = 225

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +3

Query: 279 KKILGFRIKKIKCSEEYTKRGRSRGHTASVFIKYKSLI*LFVQITIIYDSYCVYY---KI 449
           ++     + + KC  E  + G+  G+T+SV I          ++   Y+  C+Y     +
Sbjct: 25  RRTTSITVPRDKCGVETVQHGKGAGYTSSVNIVISFHDKFLTKVDRAYNITCLYAPTGDV 84

Query: 450 VTYSLTL 470
           V+Y+LT+
Sbjct: 85  VSYALTV 91


>AL032658-3|CAA21745.1|  152|Caenorhabditis elegans Hypothetical
           protein Y76A2B.4 protein.
          Length = 152

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 411 TIIYDSYCVYYKIVTYSLTLFTTELELISC--PVNYEI 518
           T I+++   Y+K +  +L  FTT++ LI C  P+++ I
Sbjct: 23  TRIFETMGFYWKRIMKTLPTFTTQIVLIFCVLPISFSI 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,773,759
Number of Sequences: 27780
Number of extensions: 230039
Number of successful extensions: 431
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)