Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H16
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   1.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   3.5  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/49 (22%), Positives = 16/49 (32%)
 Frame = -1

Query: 172 PGTLVIFENEKXXXXXXXXXXXLGVTSAIYQKKSHQNSYSPSGDCPEQT 26
           PGT+                    V +A        NS SP+G  P+ +
Sbjct: 24  PGTIQACTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHS 72


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 346 LRPRFVYSSLHLIFFIRNPNIFLVINNKIKYF 251
           +RP F Y+SL     I +P+  L +N    +F
Sbjct: 503 VRPPFTYASLIRQSIIESPDKQLTLNEIYNWF 534


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 100 VTSAIYQKKSHQN 62
           VTSAI+Q+KS +N
Sbjct: 18  VTSAIHQRKSSKN 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,889
Number of Sequences: 438
Number of extensions: 3026
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)