Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H14
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    28   0.52 
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    27   0.91 
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   1.6  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   2.1  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   2.1  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   4.9  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    24   8.5  

>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.9 bits (59), Expect = 0.52
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 363 PDAPP*SSPSHTRASNTSHTLDSIHHQMRLSTFCTASLNFSIQICS 226
           P +PP SSPS T  SN S +   I+ +   +   + S   SI  CS
Sbjct: 210 PKSPPSSSPSTTNVSNASTSSAPINPRAPQTRRESISSTSSIHYCS 255


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 148 VTRRCRSPNKGRSRRNRSQ 204
           +  R  SPNK  SRRNR+Q
Sbjct: 40  INSRSASPNKATSRRNRAQ 58


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 363 PDAPP*SSPSHTRASNTSHTL 301
           P   P SSPSH  A+++ HTL
Sbjct: 398 PTLEPPSSPSHATATSSLHTL 418


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -3

Query: 312 SHTLDSIHHQMRLSTFCTASLNFSIQICS---LHPYAFCLTSISS 187
           S  L ++H+Q+R    C   +  S  ICS   L+PY   L S+ +
Sbjct: 356 SEELMAVHNQLRTVKRCLLEVQRSGGICSERDLYPYQMKLASLEN 400


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 74  NNGYRDSNDGVVADPNTIRVKGAEELPGGAG 166
           + G R S  G  +DP+++    + E P G G
Sbjct: 169 SRGVRKSKAGAPSDPSSVHAPSSLEKPAGTG 199


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +2

Query: 83  YRDSNDGVVADPNTIRVKGAEELPGGAGHRTKADQEEIE 199
           Y D+NDG   D N    K  E   G   +    D +E E
Sbjct: 216 YDDTNDGTDDDINNNEYKDDESSSGSESYERDEDVDEEE 254


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +2

Query: 41  FYVVITRKLAQNNGYRDSNDGVVADPNTIRVKGAEELPGGAGHRTKADQEEIEVKQKA 214
           + V   R +A N GY D++ G +    + R      LP  A       Q +  V Q++
Sbjct: 297 YEVPACRNMALNTGYSDADPGYLR--TSFRSNSHNSLPYSANEEEDVLQADFLVSQQS 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,334,946
Number of Sequences: 5004
Number of extensions: 21779
Number of successful extensions: 53
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)