Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H14
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713...    29   0.85 
02_02_0271 + 8445823-8445994,8446206-8446468,8446583-8447053,844...    29   1.1  
11_06_0490 - 24293218-24293373,24293454-24293521,24293845-242939...    28   2.0  
05_03_0048 + 7796372-7796674,7796969-7797169                           28   2.6  
12_02_0334 + 17665407-17665556,17665678-17665800,17665913-17665981     27   6.0  
08_02_0997 + 23409932-23410894                                         27   6.0  
09_02_0588 + 10967169-10967286,10967420-10967969,10968385-10968487     26   7.9  
05_04_0055 + 17536241-17536729,17537297-17537401                       26   7.9  
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283...    26   7.9  

>06_01_0926 -
           7139220-7139318,7139394-7139478,7139573-7139643,
           7139996-7140076,7140805-7140895,7141242-7141330,
           7141749-7141802,7141906-7142085,7142175-7142237,
           7142575-7142705,7142807-7142900,7143343-7143684,
           7143957-7144348,7145010-7148487,7149101-7149187,
           7149324-7149367,7149495-7149591,7150429-7150572
          Length = 1873

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 288 GESNPKCEKCSRPVYAMERIKAERRV 365
           G +  KC+ C R VY +E + A+ RV
Sbjct: 7   GGTTQKCDSCGRTVYPVEELAADGRV 32


>02_02_0271 +
           8445823-8445994,8446206-8446468,8446583-8447053,
           8447145-8447570
          Length = 443

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 114 TLIQSESRVQRSYQEVQVTEQRQ 182
           TL Q + + Q  YQEVQ +EQ+Q
Sbjct: 218 TLTQQQEQAQAQYQEVQYSEQQQ 240


>11_06_0490 -
           24293218-24293373,24293454-24293521,24293845-24293986,
           24294079-24294699,24294791-24294871,24295002-24295072,
           24296106-24296176,24296568-24296675,24296786-24297024,
           24297493-24297657
          Length = 573

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 136 GCRGVTRRCRSPNKGRSRRNRSQA 207
           G R    R RSP+KGR RR+RS++
Sbjct: 143 GHRRHRSRSRSPSKGRDRRSRSRS 166


>05_03_0048 + 7796372-7796674,7796969-7797169
          Length = 167

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 133 QGCRGVTRRCRSPNKGRSRRNRSQAE-GIRMKGAYLYRKVQR 255
           + C G TRR   P KG+  + R + E G   K    + K+ R
Sbjct: 54  RACAGTTRRLDEPAKGKKEKERKKEEHGDFEKRTLFFPKITR 95


>12_02_0334 + 17665407-17665556,17665678-17665800,17665913-17665981
          Length = 113

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 71  QNNGYRDSNDGVVADPNTIRVKGAEELPGG 160
           QNN ++ +N  + A   T+R + A ELP G
Sbjct: 22  QNNRFKRNNPAISARARTVRARAA-ELPAG 50


>08_02_0997 + 23409932-23410894
          Length = 320

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 92  SNDGVVADPNTIRVKGAEELPGGA 163
           S+ G +A   T+R  GAEELPGGA
Sbjct: 161 SSGGNIAHNVTLRA-GAEELPGGA 183


>09_02_0588 + 10967169-10967286,10967420-10967969,10968385-10968487
          Length = 256

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 68  AQNNGYRDSNDGVVADPNTIRVKGAEELPGGAGHRTKADQE 190
           A  +GY+D+N G+V       V     +  G  HR  ADQE
Sbjct: 50  ANYSGYKDANTGIV------YVSDEPYVDSGENHRIAADQE 84


>05_04_0055 + 17536241-17536729,17537297-17537401
          Length = 197

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +2

Query: 41  FYVVITRKLAQNNGYRDSNDGVVADPNTIRVKGAEELPGGAGHRTKA 181
           FY ++    A    YR S DG  AD  T    G     GG G R +A
Sbjct: 84  FYALVANVRAMRGMYRSSGDGASADSAT----GGN--AGGGGERKRA 124


>04_03_1028 -
           21827961-21827972,21828018-21828112,21828286-21828361,
           21828921-21829037,21829532-21829621,21830011-21830056,
           21831407-21831502,21831599-21832008
          Length = 313

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 142 RGVTRRCRSPNKGRSR-RNRSQAEG 213
           R    R RSP +GRSR R+RS++ G
Sbjct: 62  RSSRSRSRSPRRGRSRSRSRSRSRG 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,829,620
Number of Sequences: 37544
Number of extensions: 145092
Number of successful extensions: 451
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)