Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H13
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0174 + 13815478-13815903                                         82   2e-16
03_01_0066 - 537729-538163                                             81   7e-16
12_01_0394 - 3105306-3106596,3107815-3107861                           29   3.0  
11_04_0057 - 12953479-12954364,12954484-12955034,12955125-129553...    28   4.0  
05_07_0360 + 29542854-29542900,29542988-29543129,29543207-295445...    27   7.0  
03_02_0270 - 7011363-7012302,7013237-7013640,7014264-7014333,701...    27   7.0  
07_03_1519 + 27390204-27390590,27390591-27390809,27392516-273929...    27   9.2  
05_01_0530 - 4567481-4569043                                           27   9.2  
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373...    27   9.2  

>10_07_0174 + 13815478-13815903
          Length = 141

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 39/56 (69%), Positives = 47/56 (83%)
 Frame = +2

Query: 179 IPTKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDII 346
           +P+K LRNK+AGFTTHLMRR+    VRGIS+KLQEEERERR ++VPE SALE + I
Sbjct: 41  LPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEI 96


>03_01_0066 - 537729-538163
          Length = 144

 Score = 80.6 bits (190), Expect = 7e-16
 Identities = 38/56 (67%), Positives = 47/56 (83%)
 Frame = +2

Query: 179 IPTKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDII 346
           +P+K LRNK+AGF+THLMRR+    VRGIS+KLQEEERERR ++VP+ SALE D I
Sbjct: 41  LPSKRLRNKVAGFSTHLMRRIQRGPVRGISLKLQEEERERRMDFVPDRSALEVDDI 96


>12_01_0394 - 3105306-3106596,3107815-3107861
          Length = 445

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 256 HLGVYETSHQMGGEPSNFVAKRLSRN-SISHISLLMKSRVS*CS 128
           HLG  E +HQM  EPS    +R ++  +  H +LL K+    CS
Sbjct: 227 HLGENENAHQMRSEPSTRREERGNKEVAKEHPNLLQKNARPMCS 270


>11_04_0057 -
           12953479-12954364,12954484-12955034,12955125-12955342,
           12957514-12957678,12960562-12960898
          Length = 718

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 430 GCVSCRPLML--LKSSIFNISLGXSGIRTC 347
           GC S  PL L  L +S+  +SLG SG+R C
Sbjct: 265 GCTSPSPLQLFVLCASLGFMSLGASGVRPC 294


>05_07_0360 +
           29542854-29542900,29542988-29543129,29543207-29544529,
           29544642-29544715,29545850-29545964,29546682-29546714
          Length = 577

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 173 NAIPTKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDN 307
           N +      N     +T  MRRLIH Q+R  S    ++++E  D+
Sbjct: 192 NVVDNDDKDNNNINTSTSNMRRLIHQQIRRSSSSESDKKKEDADD 236


>03_02_0270 -
           7011363-7012302,7013237-7013640,7014264-7014333,
           7014835-7015331,7015959-7016283,7018060-7018292
          Length = 822

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 416 QTINVTEVKHLQHIPWXFRNSDL 348
           Q  NV +++ LQH+P   RN+DL
Sbjct: 96  QVPNVVDLQSLQHLPDVLRNADL 118


>07_03_1519 +
           27390204-27390590,27390591-27390809,27392516-27392962,
           27393076-27393274,27393372-27393456,27393566-27393998
          Length = 589

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +2

Query: 185 TKPLRNKIAGFTTHLMRRLIHS---QVRGISIKLQEEERERRDNYVPEVSALEQDIIASP 355
           T+ L +KIA F     + + +S   QVR + +++ +E RE++      V++      AS 
Sbjct: 104 TESLSDKIASFKEQFNKDIENSLPRQVRSVLLQINDEHREKQPMSHDNVNSASLPSSASA 163

Query: 356 NSG 364
           ++G
Sbjct: 164 SAG 166


>05_01_0530 - 4567481-4569043
          Length = 520

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -3

Query: 110 AFLVLLHDPVAVSCLLADSCSPGTTVDAAPGGAPAL 3
           AFL  L  P    C++ADSCSP T   A   G P L
Sbjct: 111 AFLRAL--PRRPDCVVADSCSPWTAGVARRLGVPRL 144


>01_06_0823 +
           32234588-32234936,32236354-32237093,32237260-32237343,
           32237909-32239263,32240399-32240460,32240544-32241144,
           32241229-32241310,32241778-32241840
          Length = 1111

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 61  PIPAARGPLLTPPPVE 14
           P+ A RGP++ PPP++
Sbjct: 879 PVSAHRGPVIPPPPIQ 894


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,681,364
Number of Sequences: 37544
Number of extensions: 273589
Number of successful extensions: 852
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)