Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H13
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...    85   3e-17
AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U39472-6|AAK31392.1|  218|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    27   8.2  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    27   8.2  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 39/58 (67%), Positives = 47/58 (81%)
 Frame = +2

Query: 179 IPTKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIAS 352
           I +KPLRNKIAG+ THLMRR+    VRGISIKLQEEERERRDNY+PE+S ++   + S
Sbjct: 41  IGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTS 98


>AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical
           protein C10E2.2 protein.
          Length = 501

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 212 GFTTHLMRRLIHSQVRGISIKLQEEERE 295
           GFT  L  RLI +++R +   ++EEE E
Sbjct: 471 GFTNELSERLIRAEIRAVEDNVEEEEFE 498


>Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical
           protein C03C10.4 protein.
          Length = 244

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/37 (40%), Positives = 26/37 (70%)
 Frame = +2

Query: 227 LMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQ 337
           ++ R ++SQ+  +SI L+ E +ER+D+Y   + ALEQ
Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALEQ 218


>U39472-6|AAK31392.1|  218|Caenorhabditis elegans Hypothetical
           protein B0304.2 protein.
          Length = 218

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 262 SSHLGVYETSHQMGGEPSNFVAKRLSRNSISHISLLMKS 146
           SS  G  E SHQ     +   +KR +  ++ H+  LMKS
Sbjct: 18  SSEFGSLEDSHQFVSPVTRHASKRRAVENVDHLDELMKS 56


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 23/54 (42%), Positives = 25/54 (46%)
 Frame = -1

Query: 418 CRPLMLLKSSIFNISLGXSGIRTCNDILF*SRYFWDIIVTPFTLLFLKLNRDSS 257
           CRPL  +KSSI+N     SGI     ILF          TP   LF K N D S
Sbjct: 153 CRPLASMKSSIYNRPALYSGIAWTAAILF---------STPQLYLFEKRNGDCS 197


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 185 TKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERR 301
           T  L NK AG    L R+    + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 185 TKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERR 301
           T  L NK AG    L R+    + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,867,940
Number of Sequences: 27780
Number of extensions: 233704
Number of successful extensions: 695
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)