Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H12
         (443 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0127 + 12840738-12840913,12841475-12841635,12842123-128422...    29   2.2  
11_04_0334 - 16489768-16489796,16490588-16490936                       27   5.1  

>08_02_0127 +
           12840738-12840913,12841475-12841635,12842123-12842202,
           12842435-12842550,12842570-12842705,12842738-12842872
          Length = 267

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -3

Query: 183 HPRI---KCNKYILLFIQQIKVCK-EKLMKIIRLIKSEVSIRILFAIYYE 46
           HP++    C+  +L  I+ +++C   K+  I RL  SE+S+     ++YE
Sbjct: 187 HPKLHGMSCDSDVLAAIEYVRLCCWTKVTLIARLSASEISVMGNMVVFYE 236


>11_04_0334 - 16489768-16489796,16490588-16490936
          Length = 125

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 314 CLCHLVQMKSTNQIRRDHRVTVVLYTHKQLLP 409
           CLC +V  +    +  D  V V  Y H+ LLP
Sbjct: 80  CLCGMVTPEVEQYVCMDKAVYVAAYCHRPLLP 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,388,637
Number of Sequences: 37544
Number of extensions: 147260
Number of successful extensions: 289
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)