Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H12
         (443 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.28 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   0.86 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   6.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 312  ERLYDCYI*YYANN 271
            ERLYDCY+ Y  N+
Sbjct: 1063 ERLYDCYVCYSPND 1076


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 0.86
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 431 PSSVFKSLVAVACGYRALP*LGDLFLFD 348
           PSS F S+   + G      + DLF+FD
Sbjct: 96  PSSFFSSVSPTSLGSENYTGISDLFVFD 123


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 332 VLDDKGTSAFTIVTYNITLTIT 267
           ++ D  TS  TIV Y+I + ++
Sbjct: 558 IIVDSSTSGATIVNYSIMIFLS 579


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,542
Number of Sequences: 438
Number of extensions: 2003
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)