Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H10
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    31   0.15 
SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub...    27   1.8  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    26   4.2  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   4.2  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    25   5.5  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   7.3  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   7.3  

>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -3

Query: 477 AAHSHPVATAGC-RCADNKVHTFTGKKL*IPSDCSLYRFSVCANNHYIMVIDAYNYRA 307
           A   HPV  +   RC +NK H        +P D  L+R+   +N  Y   I A NY A
Sbjct: 26  AGDLHPVYVSCVNRCIENKCHGNPSDTSKLPLDLKLFRWDCGSNCGYECEITAENYFA 83


>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
           subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 369 RFSVCANNHYIMVIDAYNYRAFDCNSVNYPQSIS 268
           +F     NH I+ +D     AFDC +  Y   IS
Sbjct: 2   QFCPTCGNHLIVAVDEEGRNAFDCRTCPYHFPIS 35


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = -3

Query: 393 IPSDCSLYRFSVCANNHYIMVIDAYNYRAFDCNSVNYPQSISVTR*YK 250
           IP D  ++   +CA   ++ V      R+ DC  + +    S    YK
Sbjct: 28  IPEDWEIFPKHLCAFESFLYVAVGQEVRSLDCRLLKHKNEASHKNFYK 75


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/67 (25%), Positives = 25/67 (37%)
 Frame = -1

Query: 413 SPGKSCKFRAIVPFTGFPSVLITTTSWSSMLITIGHSXXXXXXXXXXXX*PGSTNNLEPS 234
           +PG +      V  T  PS  +TTTS+SS                     P +++N   +
Sbjct: 23  TPGFTTDVATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82

Query: 233 VAPFMTS 213
             P  TS
Sbjct: 83  TVPPTTS 89


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/65 (23%), Positives = 26/65 (40%)
 Frame = -1

Query: 530 KPEYMSIAFVVNPSHAPSPRTLTQ*PPLGADARTTKSIRSPGKSCKFRAIVPFTGFPSVL 351
           + E +   F  N S   +PR L + P   +  + +  ++SP  S + R        P  +
Sbjct: 373 REEKLKSRFSANASKTNTPRPLERTPSSVSPVKASSQLQSPNTSIQIRPQEQLINKPGYI 432

Query: 350 ITTTS 336
           I   S
Sbjct: 433 ILRLS 437


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -2

Query: 508 PL*STLHMHLRRALSPSS 455
           PL STLH  L  +LSPSS
Sbjct: 67  PLVSTLHFSLAPSLSPSS 84


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = +1

Query: 58  WFTDCNQPAPMEPHSTLYDYDRSREHTLLIGAKFAVLMTGYLEDKNQLR----PNSLVIN 225
           +F  C++ A +     +Y  D   EHTLL      +    Y  D N +       ++ + 
Sbjct: 67  YFCTCSEDATV----CVYPIDSPTEHTLLARTTLPIRDVAYSVDGNWIAIASDETAVKVV 122

Query: 226 GATDGSKLFVL 258
            +TD S++F L
Sbjct: 123 SSTDSSQIFSL 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,552
Number of Sequences: 5004
Number of extensions: 46777
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)