Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_H10
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0793 - 28100562-28100789,28100897-28100975,28101060-281014... 43 2e-04
10_06_0034 - 9877194-9878263,9879104-9879223,9879559-9879674,988... 31 0.79
06_01_0010 - 151694-151951,152433-152489,152683-152774,153432-15... 30 1.0
11_08_0099 + 28342765-28342872,28343016-28343167,28343461-283437... 29 3.2
03_04_0128 - 17514486-17514653,17514723-17514776,17515394-175155... 28 4.2
11_06_0106 + 20181197-20181535,20188754-20188868,20188929-201892... 27 7.4
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396... 27 7.4
05_05_0017 + 21546434-21546841 27 9.8
>04_04_0793 -
28100562-28100789,28100897-28100975,28101060-28101434,
28101534-28101882,28102000-28102102,28102136-28102454,
28102617-28102714,28103146-28103217,28103330-28103479
Length = 590
Score = 42.7 bits (96), Expect = 2e-04
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 2/138 (1%)
Frame = +1
Query: 133 HTLLIGAKFAVLMTGYLEDKNQL-RPNSLVING-ATDGSKLFVLPGYAYRLRIVNAVAIE 306
+T I +++ + + L+ QL P+ ++ING +G+ V G YRLR+ N V ++
Sbjct: 203 YTNFINSRWILALQAMLDSGKQLPSPDGILINGKGPNGASFTVEQGKTYRLRVSN-VGLQ 261
Query: 307 CPXXXXXXXXXXXXXXXXGKPVKGTIARNLQLFPGERMDFVVRASAPSGGYWVRVRGEGA 486
G +L + G+ + + A+ P G Y + V A
Sbjct: 262 STLNLRIQDHNMTLVEVEGTHTVQNTYSSLYVHAGQSLSVLFTANRPPGVYQITVSTRFA 321
Query: 487 CEGLTTKAMLIYSGFNYT 540
L + A+L Y+G + T
Sbjct: 322 KRALNSSAVLRYAGSSAT 339
>10_06_0034 -
9877194-9878263,9879104-9879223,9879559-9879674,
9880866-9881017,9881137-9881274
Length = 531
Score = 30.7 bits (66), Expect = 0.79
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +1
Query: 235 DGSKLFVLPGYAYRLRIVNAVAIECPXXXXXXXXXXXXXXXXGKPVKGTIARNLQLFPGE 414
DG L V PG Y LRI+NA A+ + + + PGE
Sbjct: 180 DGYVLDVEPGKTYLLRIINA-ALFSEYFLKIAGHRFTVVASDANYLTPYSTDVVVIAPGE 238
Query: 415 RMDFVVRASA-PSGGYWV 465
+D +V A A PSG Y++
Sbjct: 239 TLDAIVVADAPPSGRYYI 256
>06_01_0010 -
151694-151951,152433-152489,152683-152774,153432-153531,
153585-154211,154300-154638,154740-154991,155083-155556
Length = 732
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 59 GSLI-VTNQLLWSLIQHYMTTIEVGNTLCSSEQ 154
GSLI T +LW ++QH ++EVG +C EQ
Sbjct: 632 GSLIYTTTYVLWKVLQHSFMSMEVG--MCGEEQ 662
>11_08_0099 +
28342765-28342872,28343016-28343167,28343461-28343705,
28343790-28343921,28344047-28344973,28345057-28345187
Length = 564
Score = 28.7 bits (61), Expect = 3.2
Identities = 23/79 (29%), Positives = 32/79 (40%)
Frame = +1
Query: 235 DGSKLFVLPGYAYRLRIVNAVAIECPXXXXXXXXXXXXXXXXGKPVKGTIARNLQLFPGE 414
DG KL V G Y LRI+NA A+ K L + PG+
Sbjct: 213 DGFKLSVENGKTYMLRIINA-ALNDDLFFKVAGHELTVVEVDAVYTKPFKTDTLLITPGQ 271
Query: 415 RMDFVVRASAPSGGYWVRV 471
+ +VRA+ +G Y + V
Sbjct: 272 TTNVLVRANQGAGRYLLSV 290
>03_04_0128 -
17514486-17514653,17514723-17514776,17515394-17515516,
17515535-17515672
Length = 160
Score = 28.3 bits (60), Expect = 4.2
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -3
Query: 393 IPSDCSLYRFSVCANNHYIMVIDAYNY 313
+P ++ RF VC+N +++ + YN+
Sbjct: 77 VPPTMTILRFKVCSNKDSVVICEMYNF 103
>11_06_0106 +
20181197-20181535,20188754-20188868,20188929-20189200,
20189278-20189416,20189534-20189842,20190263-20190579,
20190907-20191080
Length = 554
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +2
Query: 47 DGVYGSLIVTN---QLLWSLIQHYMTTIEVGNTLCSSE 151
D VY ++ N QL+W+L + +++ V NTL + E
Sbjct: 492 DSVYDKIVAYNAIFQLIWNLEELCLSSSRVANTLATGE 529
>02_05_0246 +
27136590-27138610,27138933-27139056,27139401-27139694,
27139776-27139978,27140307-27140589
Length = 974
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 482 PSPRTLTQ*PPLGADARTTKSIRSPGKSCKF 390
P P+ + PP+G + R + +R+P KS +F
Sbjct: 289 PQPQPASAVPPVGDEERRSSVLRTPTKSGQF 319
>05_05_0017 + 21546434-21546841
Length = 135
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -1
Query: 494 PSHAPSPRTLTQ*PPLGADARTTKSIRSPGKSCKFRAIVPFTGFPSVLITTTSWSSMLI 318
PS +P+ T T P A S + GKS A P +P+VL ++ LI
Sbjct: 76 PSSSPAGATTTPAPAAPAATAPAPSPEADGKSSGAAAAPPLMTWPAVLAGAAGVATTLI 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,450,142
Number of Sequences: 37544
Number of extensions: 319174
Number of successful extensions: 858
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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