Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H10
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    31   0.41 
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    31   0.41 
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        31   0.41 
U28741-2|AAA68326.2|  377|Caenorhabditis elegans Hypothetical pr...    31   0.72 

>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical
           protein F39B2.4b protein.
          Length = 1589

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 429 CPRICTQRWLLGESARRRCM*RVDYKGYAHILRFQL 536
           C RIC ++W         C+ ++DYKG  +ILR+ L
Sbjct: 140 CSRICQEKWKFIND----CIPKIDYKGIRNILRYIL 171


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical
           protein F39B2.4a protein.
          Length = 1587

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 429 CPRICTQRWLLGESARRRCM*RVDYKGYAHILRFQL 536
           C RIC ++W         C+ ++DYKG  +ILR+ L
Sbjct: 140 CSRICQEKWKFIND----CIPKIDYKGIRNILRYIL 171


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 429 CPRICTQRWLLGESARRRCM*RVDYKGYAHILRFQL 536
           C RIC ++W         C+ ++DYKG  +ILR+ L
Sbjct: 140 CSRICQEKWKFIND----CIPKIDYKGIRNILRYIL 171


>U28741-2|AAA68326.2|  377|Caenorhabditis elegans Hypothetical
           protein F35D2.2 protein.
          Length = 377

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +1

Query: 85  PMEPHSTLYDYDRSREHTLLIGAKFAVLMTGYLE-DKNQLRPNSLVING 228
           P+EP+S+L+DY + R+  L I  ++   +   +E  K  +R  ++V+ G
Sbjct: 262 PIEPYSSLFDYQKHRDPALRIPRRWTRSVQEPVEIQKPMMRMRNMVVPG 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,095,701
Number of Sequences: 27780
Number of extensions: 275244
Number of successful extensions: 655
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)