Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H10
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.5  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   6.2  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -3

Query: 507 LCSQPFTCTFAAHSHPVATAGCRCAD-NKVHTFT 409
           +CS P T  F   +HP  T   +C   N   T+T
Sbjct: 166 VCSLPQTIVFHLETHPNVTWYSQCVTFNAFPTYT 199


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 16  LSRRFCIPSQRRCIWFT 66
           LS   CIP     IWFT
Sbjct: 537 LSSMLCIPGYMIYIWFT 553


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 16  LSRRFCIPSQRRCIWFT 66
           LS   CIP     IWFT
Sbjct: 590 LSSMLCIPGYMIYIWFT 606


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 454 HRWVQMRGQQSPYVHREKVVN 392
           H W+  R + +  VHR++ V+
Sbjct: 167 HPWICQRERVASVVHRQETVD 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,180
Number of Sequences: 438
Number of extensions: 3928
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)