Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_H08
(620 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 33 0.044
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 31 0.13
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 31 0.18
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 30 0.31
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 29 0.41
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 28 0.95
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 28 0.95
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 28 1.3
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 28 1.3
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 28 1.3
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 28 1.3
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 1.7
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 27 2.2
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 27 2.2
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 2.9
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 27 2.9
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 26 5.1
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 26 5.1
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 26 5.1
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 25 6.7
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 25 6.7
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 25 6.7
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 25 8.8
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 25 8.8
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 25 8.8
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 8.8
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 8.8
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 25 8.8
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 32.7 bits (71), Expect = 0.044
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 338 NTQYLLTSGLDSSIKLWELASSRCLIQYTG 427
NT YLLT+ D I+ W++ S + L +YTG
Sbjct: 337 NTPYLLTACADCVIRKWDVRSGQLLGEYTG 366
Score = 25.0 bits (52), Expect = 8.8
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 347 YLLTSGLDSSIKLWE 391
Y+ T G+DS ++LW+
Sbjct: 118 YIATGGMDSQVRLWK 132
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 31.1 bits (67), Expect = 0.13
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 338 NTQYLLTSGLDSSIKLWELASSRCLIQYTG 427
++ YL+T+ D +LWEL+S + QY+G
Sbjct: 270 DSTYLVTASSDHVARLWELSSGETIRQYSG 299
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 30.7 bits (66), Expect = 0.18
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 344 QYLLTSGLDSSIKLWELASSRCLIQYTGAG 433
+Y+L +G + ++LW + S C+ +Y G G
Sbjct: 27 KYVLAAGNERVVRLWNVKSGACIHEYAGHG 56
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 29.9 bits (64), Expect = 0.31
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 350 LLTSGLDSSIKLWELASSRCLIQY 421
+LT+ D++IKLW L + +CL +
Sbjct: 231 ILTASSDATIKLWSLRAQKCLFSF 254
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 29.5 bits (63), Expect = 0.41
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +2
Query: 203 GRYLSEGIFHSFIQIFFSLNIFKNATNSHFIIAINFNFSLYICICNTQYLLTSGLDSSIK 382
G++++ G I+I+ S + H + FS + +YL++ LD++IK
Sbjct: 429 GQFIAAGSLDKVIRIWTSSGTLVEQLHGHEESVYSVAFSP-----DGKYLVSGSLDNTIK 483
Query: 383 LWEL 394
LWEL
Sbjct: 484 LWEL 487
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 28.3 bits (60), Expect = 0.95
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 338 NTQYLLTSGLDSSIKLWELASSRCLIQYTG 427
NT L + DS ++LW+L SSR + + G
Sbjct: 158 NTWVLASGADDSRVRLWDLNSSRSMAVFEG 187
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 0.95
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 338 NTQYLLTSGLDSSIKLWELASSR 406
N +YLL S L+S I+LW+ +R
Sbjct: 234 NRKYLLVSNLNSQIRLWDYRRNR 256
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 311 NFSLYICICNTQYLLTSGLDSSIKLWELASSRCL 412
N+ Y + YL+T+G D+ IK+W+ + C+
Sbjct: 188 NYVNYYPAGDKPYLITAGDDNLIKVWDYQTKACV 221
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 350 LLTSGLDSSIKLWELASSRCLIQYT 424
++T +DS+I+LW+LA+ + L T
Sbjct: 304 VVTGSMDSTIRLWDLAAGKTLTTLT 328
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 344 QYLLTSGLDSSIKLWELASSRCLIQYTG 427
Q+ T D +IK+W+LAS + TG
Sbjct: 176 QWFCTGAGDRTIKIWDLASGVLKLTLTG 203
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 344 QYLLTSGLDSSIKLWELASSRCLIQY 421
+Y++T+G DS +K+W+L + + L Y
Sbjct: 278 RYMVTAGADSLLKVWDLRTYKELHSY 303
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 27.9 bits (59), Expect = 1.3
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 344 QYLLTSGLDSSIKLWELASSRCLIQYT 424
Q ++T D IK+W++ S C++ +T
Sbjct: 352 QRIITGADDGKIKVWDMNSGFCIVTFT 378
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 338 NTQYLLTSGLDSSIKLWELASSRCLIQYTG 427
+ +YLL+ D+S +LW + + L+ Y G
Sbjct: 390 DNKYLLSCSEDASARLWSVDTKTALVAYKG 419
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 27.1 bits (57), Expect = 2.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 350 LLTSGLDSSIKLWELASSRCLIQYTG 427
L++ DSSI++W +++ CL G
Sbjct: 520 LVSGSYDSSIRIWRVSTGECLYHLRG 545
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 27.1 bits (57), Expect = 2.2
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +2
Query: 350 LLTSGLDSSIKLWELASSRCLIQY 421
LL+ +D S+++W++ S CL ++
Sbjct: 116 LLSGSIDRSLQIWDITSLSCLCKF 139
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 347 YLLTSGLDSSIKLWELASSRCLIQYTG 427
Y+LT+ D IKLW+ S I + G
Sbjct: 149 YVLTASQDGLIKLWDYKESSSTITFRG 175
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 344 QYLLTSGLDSSIKLWELASSRCLIQYTG 427
+YL+T D IKLW+L++ + ++G
Sbjct: 373 KYLVTGTEDRQIKLWDLSTQKVRYVFSG 400
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 5.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 338 NTQYLLTSGLDSSIKLWELASSR 406
N + LTS D +++LW+ + SR
Sbjct: 415 NKDFALTSSFDWTVRLWQCSPSR 437
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 338 NTQYLLTSGLDSSIKLWEL-ASSRCLIQYT 424
+ QY+ + DS+++LW ASSR I+ T
Sbjct: 327 DAQYIFSGSDDSNVRLWRARASSRASIRST 356
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 25.8 bits (54), Expect = 5.1
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 347 YLLTSGLDSSIKLWELASS 403
YL++S LD +I++W+L S
Sbjct: 318 YLISSSLDQTIRVWDLEYS 336
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 335 CNTQYLLTSGLDSSIKLWE 391
CN YL T D S+ +WE
Sbjct: 388 CNGNYLATCSRDKSVWIWE 406
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 6.7
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +2
Query: 362 GLDSSIKLWELASSRC 409
G+D +IK+W+L ++ C
Sbjct: 196 GIDGAIKIWDLRNNHC 211
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/23 (39%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
Frame = +2
Query: 347 YLLTSGLDSSIKLWELA-SSRCL 412
YLL+ G D+++++W+L S++C+
Sbjct: 312 YLLSRGEDNALRVWDLRNSNKCV 334
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 8.8
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -2
Query: 619 HNARDFCGTKNFEWS 575
H+ R+ CG+K+FE++
Sbjct: 431 HSCREMCGSKDFEYA 445
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 320 LYICICNTQYLLTSGLDSSIKLWELASSRCL 412
L I +LLTS D +++LW S++ L
Sbjct: 259 LSISWSKNDFLLTSSADRTVRLWHPKSTKSL 289
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 350 LLTSGLDSSIKLWELASSRCL 412
+L+ DS+IK+W L ++ CL
Sbjct: 407 VLSGSDDSTIKIWSLETNTCL 427
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 338 NTQYLLTSGLDSSIKLWELASSR 406
N L T +DSS+ W+L S R
Sbjct: 334 NPDVLATCSIDSSVHCWDLRSPR 356
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 444 LPVVPAPVYCMRHLLLANSHSFIDESNPDV 355
LP PAPV RH L+ N +NP++
Sbjct: 736 LPTAPAPVITSRHALVNNQ---FPTNNPNI 762
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 444 LPVVPAPVYCMRHLLLANSHSFIDESN 364
LP++ APV LL ++ F+D +N
Sbjct: 354 LPIIVAPVIRSTQTLLDKNYRFLDSTN 380
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,609
Number of Sequences: 5004
Number of extensions: 51976
Number of successful extensions: 192
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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