Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_H08
(620 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68315-3|CAA92670.1| 430|Caenorhabditis elegans Hypothetical pr... 59 2e-09
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical pr... 34 0.071
Z73978-3|CAA98293.1| 501|Caenorhabditis elegans Hypothetical pr... 34 0.094
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 32 0.38
U50311-5|AAX22295.1| 299|Caenorhabditis elegans Serpentine rece... 32 0.38
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 32 0.38
Z81481-9|CAD54126.1| 587|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z81474-8|CAB03905.2| 587|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z75543-5|CAA99872.2| 270|Caenorhabditis elegans Hypothetical pr... 29 2.0
U41278-1|AAK31511.1| 305|Caenorhabditis elegans Hypothetical pr... 29 2.0
U23528-8|AAK31386.2| 293|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z74030-18|CAA98448.1| 494|Caenorhabditis elegans Hypothetical p... 29 3.5
Z73970-6|CAA98247.1| 494|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF067945-13|AAC17676.2| 308|Caenorhabditis elegans Serpentine r... 29 3.5
Z93379-9|CAE11301.1| 354|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical pr... 28 6.2
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 28 6.2
AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein. 28 6.2
>Z68315-3|CAA92670.1| 430|Caenorhabditis elegans Hypothetical
protein F28C6.3 protein.
Length = 430
Score = 59.3 bits (137), Expect = 2e-09
Identities = 24/35 (68%), Positives = 31/35 (88%)
Frame = +2
Query: 338 NTQYLLTSGLDSSIKLWELASSRCLIQYTGAGTTG 442
N +Y+LTSG+DS +KLWEL+++RCLI YTGAG TG
Sbjct: 314 NGKYILTSGMDSIVKLWELSTNRCLIVYTGAGATG 348
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +2
Query: 338 NTQYLLTSGLDSSIKLWELASSRCLIQYTG 427
N +Y+L S LDS++KLW+ + + L QYTG
Sbjct: 267 NGKYILASNLDSTLKLWDFSKGKTLKQYTG 296
>Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical
protein K04G11.4 protein.
Length = 395
Score = 34.3 bits (75), Expect = 0.071
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 197 RLGRYLSEGIFHSFIQIFFSLN--IFKNATNSHFIIAINFNFSLYICICNTQYLLTSGLD 370
R G YL+ G + ++I+ S K + + FS N +Y+L S L+
Sbjct: 242 RDGAYLASGSYDGIVRIWDSTTGTCVKTLIDEEHPPITHVKFSP-----NGKYILASNLN 296
Query: 371 SSIKLWELASSRCLIQYTG 427
+++KLW+ R L +YTG
Sbjct: 297 NTLKLWDYQKLRVLKEYTG 315
>Z73978-3|CAA98293.1| 501|Caenorhabditis elegans Hypothetical
protein ZC302.2a protein.
Length = 501
Score = 33.9 bits (74), Expect = 0.094
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +2
Query: 323 YICIC-NTQYLLTSGLDSSIKLWELASSRCLIQYTG 427
++C N +YLL++ LDSS+KLW+ ++ L Y G
Sbjct: 387 FVCFSPNGKYLLSAQLDSSLKLWDPKKAKPLKYYNG 422
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +2
Query: 203 GRYLSEGIFHSFIQIFFSLNIFKNATNSHFIIAIN-FNFSLYICICNTQYLLTSGLDSSI 379
G+YL G I+++ ++++ T + + IN F++S N+Q++ ++ D+++
Sbjct: 225 GKYLGTGSADKQIKVWNTVDMTYLQTLASHQLGINDFSWS-----SNSQFIASASDDTTV 279
Query: 380 KLWELASSRCLIQYTGAGTTGNYFF 454
K++++ S CL T G T NY F
Sbjct: 280 KIFDVISGACL--RTMRGHT-NYVF 301
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 31.9 bits (69), Expect = 0.38
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 347 YLLTSGLDSSIKLWELASSRCL 412
++L+SG+D ++KLW L+ + CL
Sbjct: 730 FILSSGMDRTVKLWHLSRNECL 751
>U50311-5|AAX22295.1| 299|Caenorhabditis elegans Serpentine
receptor, class sx protein34, isoform c protein.
Length = 299
Score = 31.9 bits (69), Expect = 0.38
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +2
Query: 230 HSFIQIFFSLNIFKNATNSHFIIAINFNFSLYICICNTQYLLTSGLDSSIKLWELASSRC 409
H++ QI F+ ++F + SHF+ + +L I + ++L G+D AS R
Sbjct: 55 HNYGQIIFTAHLFFDIQTSHFVCTLLNIPTLIGVISGSCWILAMGIDRFFACKWPASYRS 114
Query: 410 LIQYT 424
L+ Y+
Sbjct: 115 LVSYS 119
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 31.9 bits (69), Expect = 0.38
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 347 YLLTSGLDSSIKLWELASSRCL 412
++L+SG+D ++KLW L+ + CL
Sbjct: 730 FILSSGMDRTVKLWHLSRNECL 751
>Z81481-9|CAD54126.1| 587|Caenorhabditis elegans Hypothetical
protein C18D4.8 protein.
Length = 587
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 541 KVFDYTFRVQEYYKILLKKRIFFTFQKINEKIVTSCPGACI 419
K+FDY F+ E K+ L + I F FQK+ + P I
Sbjct: 68 KIFDYWFQRFEIGKVNLTETIKFRFQKVKSTSLCDMPAEVI 108
>Z81474-8|CAB03905.2| 587|Caenorhabditis elegans Hypothetical
protein C18D4.8 protein.
Length = 587
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 541 KVFDYTFRVQEYYKILLKKRIFFTFQKINEKIVTSCPGACI 419
K+FDY F+ E K+ L + I F FQK+ + P I
Sbjct: 68 KIFDYWFQRFEIGKVNLTETIKFRFQKVKSTSLCDMPAEVI 108
>Z75543-5|CAA99872.2| 270|Caenorhabditis elegans Hypothetical
protein K01D12.5 protein.
Length = 270
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 564 NREYYFFKKYLITHLGYKNI 505
+R YY + +YL TH GY NI
Sbjct: 77 SRNYYQYPQYLPTHTGYSNI 96
>U41278-1|AAK31511.1| 305|Caenorhabditis elegans Hypothetical
protein F33G12.2 protein.
Length = 305
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 347 YLLTSGLDSSIKLWELASSRCLIQYTGAG 433
Y +T G D ++KLW S L Y+G G
Sbjct: 30 YCVTCGSDKTVKLWNPLKSSLLKTYSGTG 58
>U23528-8|AAK31386.2| 293|Caenorhabditis elegans Hypothetical
protein B0034.5 protein.
Length = 293
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 287 HFIIAINFNFSLYICICNTQYLLTSGLDSSIKLWELASSRCL 412
HFI+A+ F F + I +C +L L K ELA CL
Sbjct: 49 HFILALCF-FDIIISVCYMPVILVDSLKDWTKWIELARPACL 89
>Z74030-18|CAA98448.1| 494|Caenorhabditis elegans Hypothetical
protein D1054.15 protein.
Length = 494
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 344 QYLLTSGLDSSIKLWELASSRCLIQYTG 427
Q+ + G D IK+W+LAS + + TG
Sbjct: 197 QWFASGGADRIIKIWDLASGQLKLSLTG 224
>Z73970-6|CAA98247.1| 494|Caenorhabditis elegans Hypothetical
protein D1054.15 protein.
Length = 494
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 344 QYLLTSGLDSSIKLWELASSRCLIQYTG 427
Q+ + G D IK+W+LAS + + TG
Sbjct: 197 QWFASGGADRIIKIWDLASGQLKLSLTG 224
>AF067945-13|AAC17676.2| 308|Caenorhabditis elegans Serpentine
receptor, class x protein59 protein.
Length = 308
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 290 FIIAINFNFSLYICICNTQYLLTSG 364
FI+ + F+FS Y +C+ +Y L +G
Sbjct: 130 FILTLGFSFSFYEVLCSLEYNLKTG 154
>Z93379-9|CAE11301.1| 354|Caenorhabditis elegans Hypothetical
protein F21H7.14 protein.
Length = 354
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 209 YLSEGIFHSFIQIFFSLNIFKNATNSHFIIAINFNFSLYICICN 340
YL EG HS +Q F + K HF+I ++ SL + + N
Sbjct: 128 YLLEGRSHSLLQNKFRIQSTKRRIIYHFLIFLSNGISLTLFLIN 171
>Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical
protein T03F6.5 protein.
Length = 404
Score = 27.9 bits (59), Expect = 6.2
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +2
Query: 344 QYLLTSGLDSSIKLWELASSRCL 412
+YL++ D ++++WEL++ RC+
Sbjct: 345 KYLISVADDKTLRVWELSAQRCM 367
>Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical
protein F35G12.4b protein.
Length = 680
Score = 27.9 bits (59), Expect = 6.2
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +2
Query: 353 LTSGLDSSIKLWELASSRCL 412
L++G D++I+LW++ RC+
Sbjct: 236 LSAGSDATIRLWDIGQQRCI 255
>Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical
protein F35G12.4a protein.
Length = 683
Score = 27.9 bits (59), Expect = 6.2
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +2
Query: 353 LTSGLDSSIKLWELASSRCL 412
L++G D++I+LW++ RC+
Sbjct: 236 LSAGSDATIRLWDIGQQRCI 255
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 27.9 bits (59), Expect = 6.2
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = +2
Query: 338 NTQYLLTSGLDSSIKLWELASSRCLIQYTG 427
N Q+L+T D +++W++ + +C+ + G
Sbjct: 1006 NNQFLITGSGDFVVQMWDVTNGKCISRMGG 1035
>AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein.
Length = 404
Score = 27.9 bits (59), Expect = 6.2
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +2
Query: 344 QYLLTSGLDSSIKLWELASSRCL 412
+YL++ D ++++WEL++ RC+
Sbjct: 345 KYLISVADDKTLRVWELSAQRCM 367
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,596,691
Number of Sequences: 27780
Number of extensions: 286928
Number of successful extensions: 743
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -