Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_H07
(386 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF387862-1|AAL56547.1| 476|Anopheles gambiae gag polyprotein pr... 35 0.001
M93691-1|AAA29366.1| 574|Anopheles gambiae protein ( Anopheles ... 34 0.002
AF295693-1|AAL55241.1| 786|Anopheles gambiae polyprotein protein. 32 0.006
AB090823-1|BAC57921.1| 429|Anopheles gambiae gag-like protein p... 32 0.006
AB090812-1|BAC57899.1| 541|Anopheles gambiae gag-like protein p... 32 0.006
AB090817-1|BAC57909.1| 344|Anopheles gambiae gag-like protein p... 32 0.008
AB090824-1|BAC57923.1| 298|Anopheles gambiae gag-like protein p... 31 0.019
AB090813-1|BAC57901.1| 724|Anopheles gambiae gag-like protein p... 29 0.045
AB090820-1|BAC57915.1| 527|Anopheles gambiae gag-like protein p... 29 0.059
AB090822-1|BAC57919.1| 468|Anopheles gambiae gag-like protein p... 29 0.078
AB090818-1|BAC57911.1| 285|Anopheles gambiae gag-like protein p... 29 0.078
M93690-1|AAA29364.1| 613|Anopheles gambiae ORF1 protein. 28 0.10
AB090816-1|BAC57907.1| 455|Anopheles gambiae gag-like protein p... 28 0.10
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos... 27 0.32
AB090815-1|BAC57905.1| 492|Anopheles gambiae gag-like protein p... 27 0.32
AB090814-1|BAC57903.1| 499|Anopheles gambiae gag-like protein p... 26 0.42
AB090819-1|BAC57913.1| 400|Anopheles gambiae gag-like protein p... 25 0.73
AJ404478-1|CAC16182.1| 77|Anopheles gambiae putative GATA fact... 24 2.2
AY193729-1|AAO62002.1| 499|Anopheles gambiae cytochrome P450 CY... 23 2.9
DQ370045-1|ABD18606.1| 285|Anopheles gambiae putative TIL domai... 23 3.9
U50472-1|AAA93475.1| 141|Anopheles gambiae protein ( Anopheles ... 23 5.1
AY146732-1|AAO12092.1| 327|Anopheles gambiae odorant-binding pr... 22 6.8
>AF387862-1|AAL56547.1| 476|Anopheles gambiae gag polyprotein
protein.
Length = 476
Score = 34.7 bits (76), Expect = 0.001
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 271 LAPNGTKTCYVCGKPGHISRDCDEERN 351
+ P TC+ C KPGH+ RDC E N
Sbjct: 196 VGPEKKITCHRCRKPGHMKRDCPMESN 222
Score = 33.1 bits (72), Expect = 0.004
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 124 IRVMPNPTPSCYNCNKTGHIARNCPEGGRDNSNQT 228
+RV P +C+ C K GH+ R+CP + T
Sbjct: 194 LRVGPEKKITCHRCRKPGHMKRDCPMESNNTPTST 228
>M93691-1|AAA29366.1| 574|Anopheles gambiae protein ( Anopheles
gambiae RT2 retroposon. ).
Length = 574
Score = 34.3 bits (75), Expect = 0.002
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Frame = +1
Query: 106 CNGTGHIRVMPNPTPS----CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNL 273
C+ +R P PTP C+ C + GHIA NC D N C C +
Sbjct: 489 CDCVSKVRAAP-PTPPERQRCFRCLEMGHIASNC-RSTADRQN-LCIRC--GLTGHKARS 543
Query: 274 APNGTKTCYVCGKPGHI 324
N K C +CG HI
Sbjct: 544 CQNEAK-CALCGGAHHI 559
Score = 26.2 bits (55), Expect = 0.42
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +1
Query: 223 QTCYNCNKS--VAXISRNLAPNGTKTCYVCGKPGHISRDCDEE 345
Q C+ C + +A R+ A C CG GH +R C E
Sbjct: 506 QRCFRCLEMGHIASNCRSTADR-QNLCIRCGLTGHKARSCQNE 547
>AF295693-1|AAL55241.1| 786|Anopheles gambiae polyprotein protein.
Length = 786
Score = 32.3 bits (70), Expect = 0.006
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 295 CYVCGKPGHISRDCDEERN 351
C+ CG+PGH RDC E N
Sbjct: 76 CFFCGQPGHKKRDCKEFLN 94
Score = 23.4 bits (48), Expect = 2.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPE 201
+C+ C + GH R+C E
Sbjct: 75 ACFFCGQPGHKKRDCKE 91
>AB090823-1|BAC57921.1| 429|Anopheles gambiae gag-like protein
protein.
Length = 429
Score = 32.3 bits (70), Expect = 0.006
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 223 QTCYNCNKSVAXISRNLAP-NGTKTCYVCGKPGHISRDCDEE 345
Q CY C + +P + K C CG GH+++DC+ E
Sbjct: 362 QRCYRCLERGHIARECRSPVDRQKACIRCGAEGHLAKDCNAE 403
Score = 31.1 bits (67), Expect = 0.015
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +1
Query: 154 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISR- 330
CY C + GHIAR C + + C C + ++++ N C VC P +
Sbjct: 364 CYRCLERGHIAREC--RSPVDRQKACIRCG-AEGHLAKDC--NAEVKCAVCSGPHRVGHS 418
Query: 331 DC 336
DC
Sbjct: 419 DC 420
Score = 24.2 bits (50), Expect = 1.7
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Frame = +1
Query: 106 CNGTGHI-RVMPNPTP---SCYNCNKTGHIARNC 195
C GHI R +P +C C GH+A++C
Sbjct: 367 CLERGHIARECRSPVDRQKACIRCGAEGHLAKDC 400
>AB090812-1|BAC57899.1| 541|Anopheles gambiae gag-like protein
protein.
Length = 541
Score = 32.3 bits (70), Expect = 0.006
Identities = 31/113 (27%), Positives = 41/113 (36%), Gaps = 9/113 (7%)
Frame = +1
Query: 16 RLRIRRLASTGGNASVHRPGTARDA---ESTATCNGTGHIRVMPNPTPS---CYNCNKTG 177
R+ + L A VH P A A C IR + P CY C + G
Sbjct: 425 RVSVWELQDGTQRARVHLPAKAAAAFEGSKLRLCGCISKIRGVEKAAPERQRCYRCLERG 484
Query: 178 HIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKP---GHIS 327
H+A C + Q C C S +R+ + C CG P GH+S
Sbjct: 485 HLAHACRSS--TDRQQLCIRCG-SEGHKARDC--SSYVKCAACGGPHRIGHMS 532
Score = 27.9 bits (59), Expect = 0.14
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 223 QTCYNCNKS--VAXISRNLAPNGTKTCYVCGKPGHISRDC 336
Q CY C + +A R+ + + + C CG GH +RDC
Sbjct: 475 QRCYRCLERGHLAHACRS-STDRQQLCIRCGSEGHKARDC 513
>AB090817-1|BAC57909.1| 344|Anopheles gambiae gag-like protein
protein.
Length = 344
Score = 31.9 bits (69), Expect = 0.008
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +1
Query: 121 HIRVMPNPTPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCY 300
HIR + CY C K GH + +C E R N C+ C ++ + N K C
Sbjct: 267 HIREVMEEQ-KCYKCWKVGHTSYHCREPDRSN---LCWKC--GLSGHKKQACTNSVK-CL 319
Query: 301 VCG 309
CG
Sbjct: 320 DCG 322
Score = 27.9 bits (59), Expect = 0.14
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +1
Query: 223 QTCYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISRDC 336
Q CY C K P+ + C+ CG GH + C
Sbjct: 275 QKCYKCWKVGHTSYHCREPDRSNLCWKCGLSGHKKQAC 312
Score = 24.2 bits (50), Expect = 1.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 295 CYVCGKPGHISRDCDE 342
CY C K GH S C E
Sbjct: 277 CYKCWKVGHTSYHCRE 292
>AB090824-1|BAC57923.1| 298|Anopheles gambiae gag-like protein
protein.
Length = 298
Score = 30.7 bits (66), Expect = 0.019
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +1
Query: 124 IRVMPNPTPS---CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKT 294
+R P P+ C+ C + GH+ R C +G N + C C A N K
Sbjct: 223 VREAPKPSAESRRCFRCLERGHMVREC-QG--TNRSSLCIRC--GAANHKAVNCTNDVK- 276
Query: 295 CYVCGKPGHIS 327
C +CG P I+
Sbjct: 277 CLLCGGPHRIA 287
Score = 22.2 bits (45), Expect = 6.8
Identities = 8/42 (19%), Positives = 17/42 (40%)
Frame = +1
Query: 220 NQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISRDCDEE 345
++ C+ C + + N + C CG H + +C +
Sbjct: 233 SRRCFRCLERGHMVRECQGTNRSSLCIRCGAANHKAVNCTND 274
>AB090813-1|BAC57901.1| 724|Anopheles gambiae gag-like protein
protein.
Length = 724
Score = 29.5 bits (63), Expect = 0.045
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Frame = +1
Query: 124 IRVMPNPTPS----CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTK 291
+R P PTP CY C + GH A +C D+ C C V + + K
Sbjct: 649 VRAAP-PTPRERVRCYRCLELGHWAHDC--RSPDDRQNMCIRC--GVVGHMAKVCTSQPK 703
Query: 292 TCYVCGKPGHISR-DC 336
C CG P I DC
Sbjct: 704 -CLKCGGPHTIGHPDC 718
>AB090820-1|BAC57915.1| 527|Anopheles gambiae gag-like protein
protein.
Length = 527
Score = 29.1 bits (62), Expect = 0.059
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = +1
Query: 154 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCG 309
C+ C + GHIA C G D S + C C S N K C +CG
Sbjct: 466 CFRCLERGHIAATCT--GEDRSKR-CLRCGDQTHKASG--CTNEVK-CMLCG 511
>AB090822-1|BAC57919.1| 468|Anopheles gambiae gag-like protein
protein.
Length = 468
Score = 28.7 bits (61), Expect = 0.078
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 229 CYNCNKSVAXISRNL-AP-NGTKTCYVCGKPGHISRDCDEE 345
CY C + +SR+ +P N + C CG GH++ C+ E
Sbjct: 406 CYRCLER-GHVSRDCHSPVNHSNVCIRCGTSGHLAATCEAE 445
Score = 28.7 bits (61), Expect = 0.078
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 154 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKS 249
CY C + GH++R+C N + C C S
Sbjct: 406 CYRCLERGHVSRDC--HSPVNHSNVCIRCGTS 435
Score = 27.9 bits (59), Expect = 0.14
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 295 CYVCGKPGHISRDCDEERN 351
CY C + GH+SRDC N
Sbjct: 406 CYRCLERGHVSRDCHSPVN 424
>AB090818-1|BAC57911.1| 285|Anopheles gambiae gag-like protein
protein.
Length = 285
Score = 28.7 bits (61), Expect = 0.078
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 154 CYNCNKTGHIARNCPEGGRDNSNQTCYNC 240
CY C + GH A C G+D S++ C+ C
Sbjct: 214 CYRCYEYGHTAARC--HGKDRSSK-CHRC 239
>M93690-1|AAA29364.1| 613|Anopheles gambiae ORF1 protein.
Length = 613
Score = 28.3 bits (60), Expect = 0.10
Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Frame = +1
Query: 25 IRRLASTGGNASVHRPGTARDA-ESTATCNGTGHIRV-MPNPTPS----CYNCNKTGHIA 186
IR + A V P A A + T G RV M PTP CY C + GH A
Sbjct: 502 IRTMPDGTQRARVRLPAKAAKALDGTKLRLGFCISRVKMAPPTPKEHLRCYRCLEHGHNA 561
Query: 187 RNCPEGGRDNSNQTCYNCNK 246
R+C D N C C +
Sbjct: 562 RDC-RSPVDRQN-VCIRCGQ 579
Score = 23.8 bits (49), Expect = 2.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 295 CYVCGKPGHISRDC 336
CY C + GH +RDC
Sbjct: 551 CYRCLEHGHNARDC 564
Score = 23.0 bits (47), Expect = 3.9
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +1
Query: 229 CYNCNKSVAXISRNLAP-NGTKTCYVCGKPGHISRDCDEE 345
CY C + +P + C CG+ GH + C EE
Sbjct: 551 CYRCLEHGHNARDCRSPVDRQNVCIRCGQEGHKAGTCMEE 590
>AB090816-1|BAC57907.1| 455|Anopheles gambiae gag-like protein
protein.
Length = 455
Score = 28.3 bits (60), Expect = 0.10
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 154 CYNCNKTGHIARNCPEGGRDNSNQTCYNC 240
CY C + GH+AR+C + Q C C
Sbjct: 390 CYRCLERGHLARDCQ--SPVDRQQACIRC 416
Score = 25.8 bits (54), Expect = 0.55
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +1
Query: 223 QTCYNCNKSVAXISRNLAP-NGTKTCYVCGKPGHISRDCDEE 345
Q CY C + +P + + C CG GH ++ C E
Sbjct: 388 QRCYRCLERGHLARDCQSPVDRQQACIRCGADGHYAKSCTSE 429
Score = 23.0 bits (47), Expect = 3.9
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Frame = +1
Query: 85 DAESTATCNGTGHI-RVMPNPTP---SCYNCNKTGHIARNC 195
D + C GH+ R +P +C C GH A++C
Sbjct: 386 DRQRCYRCLERGHLARDCQSPVDRQQACIRCGADGHYAKSC 426
>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
polyprotein protein.
Length = 1726
Score = 26.6 bits (56), Expect = 0.32
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +1
Query: 154 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNK 246
C+NC + GH AR C S C C +
Sbjct: 377 CFNCLRKGHSAREC------RSTYVCQQCKR 401
Score = 22.2 bits (45), Expect = 6.8
Identities = 11/48 (22%), Positives = 20/48 (41%)
Frame = +1
Query: 193 CPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISRDC 336
CP + C ++ + I+R C+ C + GH +R+C
Sbjct: 344 CPLCNEQHPLHVCERFERA-SVINREEIVRKHGLCFNCLRKGHSAREC 390
>AB090815-1|BAC57905.1| 492|Anopheles gambiae gag-like protein
protein.
Length = 492
Score = 26.6 bits (56), Expect = 0.32
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 142 PTPSCYNCNKTGHIARNC 195
P C+ C +TGH +R+C
Sbjct: 414 PKRRCFKCWETGHFSRDC 431
Score = 26.6 bits (56), Expect = 0.32
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 289 KTCYVCGKPGHISRDC 336
+ C+ C + GH SRDC
Sbjct: 416 RRCFKCWETGHFSRDC 431
>AB090814-1|BAC57903.1| 499|Anopheles gambiae gag-like protein
protein.
Length = 499
Score = 26.2 bits (55), Expect = 0.42
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 142 PTPSCYNCNKTGHIARNC 195
P+ CY C +T HI+++C
Sbjct: 427 PSRRCYRCWQTDHISQDC 444
Score = 25.4 bits (53), Expect = 0.73
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 286 TKTCYVCGKPGHISRDC 336
++ CY C + HIS+DC
Sbjct: 428 SRRCYRCWQTDHISQDC 444
>AB090819-1|BAC57913.1| 400|Anopheles gambiae gag-like protein
protein.
Length = 400
Score = 25.4 bits (53), Expect = 0.73
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +1
Query: 229 CYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISRDC 336
C+ C K + +K C CG+ GH R+C
Sbjct: 330 CFKCWKLGHKGFECTGQDRSKLCIKCGQEGHKIREC 365
Score = 25.0 bits (52), Expect = 0.97
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = +1
Query: 154 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSV 252
C C + GH R CP TC +C + +
Sbjct: 352 CIKCGQEGHKIRECPNA------MTCLDCREDM 378
>AJ404478-1|CAC16182.1| 77|Anopheles gambiae putative GATA factor
protein.
Length = 77
Score = 23.8 bits (49), Expect = 2.2
Identities = 15/63 (23%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Frame = +1
Query: 82 RDAESTATCNGTG-HIRVMPNPTPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAX 258
RD CN + R P K + P G S TC NC +
Sbjct: 11 RDIVGHTLCNACALYTRQNPGTNRPPNRSQKAKQTVKTPPAQGNRRSGVTCANCQTTTTT 70
Query: 259 ISR 267
+ R
Sbjct: 71 LWR 73
>AY193729-1|AAO62002.1| 499|Anopheles gambiae cytochrome P450
CYPm3r9 protein.
Length = 499
Score = 23.4 bits (48), Expect = 2.9
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -1
Query: 119 PVPLHVAVLSASRAVPG--RCTEAFPPVEASLRILSRDP 9
PVP+H+ V S VPG EA V + + DP
Sbjct: 369 PVPVHLRVASKDYHVPGTKSVLEAGTAVMIPVHAIHHDP 407
>DQ370045-1|ABD18606.1| 285|Anopheles gambiae putative TIL domain
protein protein.
Length = 285
Score = 23.0 bits (47), Expect = 3.9
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = +1
Query: 7 YGSRLRIRRLASTGGNASVHRPGTARDAESTATCNGTGHIRVMPNPTPSCYNCNKTGHIA 186
Y + + R +TGGNA+ HR + T + + + P C T
Sbjct: 154 YPTGVNATRYGTTGGNATHHRTTGVFVTRHSTTGSSVRPSKGLIPVAPGA-KCPIT---- 208
Query: 187 RNCPEGGRDNSNQTCYNCNK-SVAXISRNLAPNGTKTCYVCG 309
C GR+ + Q C CN+ + + IS + ++CY CG
Sbjct: 209 -TC---GRNEALQACGTCNQITCSGISTEVC---RRSCY-CG 242
>U50472-1|AAA93475.1| 141|Anopheles gambiae protein ( Anopheles
gambiae putativefatty acid binding protein mRNA,
partial cds. ).
Length = 141
Score = 22.6 bits (46), Expect = 5.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 94 SLHRAQCPVGALKHSRRLKP 35
+ HR Q + KHS R+KP
Sbjct: 4 AFHRKQHSIAFPKHSSRVKP 23
>AY146732-1|AAO12092.1| 327|Anopheles gambiae odorant-binding
protein AgamOBP44 protein.
Length = 327
Score = 22.2 bits (45), Expect = 6.8
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Frame = +1
Query: 4 NYGSRLRIRRLASTGGNASVHR---PGTARDAESTATCNGTGH 123
+YG R + G V+ PG S + C G GH
Sbjct: 285 SYGGRKPSSTCSKASGTGQVYNLSYPGYKSRMSSCSRCGGRGH 327
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 404,070
Number of Sequences: 2352
Number of extensions: 7916
Number of successful extensions: 68
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 29929410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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