Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_H07
(386 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 62 1e-10
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 53 6e-08
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 42 3e-05
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 42 3e-05
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 42 3e-05
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 43 7e-05
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 43 9e-05
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 43 9e-05
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 43 9e-05
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 41 3e-04
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 41 3e-04
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 41 3e-04
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 40 6e-04
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 40 6e-04
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 38 0.002
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 38 0.002
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 38 0.002
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 38 0.002
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 37 0.004
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 35 0.017
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 35 0.017
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 33 0.093
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 31 0.21
Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical pr... 30 0.49
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 30 0.49
AF040647-6|AAR30205.3| 436|Caenorhabditis elegans Hypothetical ... 30 0.49
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr... 29 0.86
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr... 29 0.86
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 29 0.86
U40030-1|AAR12977.1| 235|Caenorhabditis elegans Hypothetical pr... 29 0.86
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein. 29 0.86
AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical ... 29 0.86
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p... 29 1.1
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr... 29 1.1
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 29 1.1
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 28 2.0
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 2.0
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 2.0
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 28 2.6
AL132862-14|CAB60548.1| 541|Caenorhabditis elegans Hypothetical... 28 2.6
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z54281-2|CAA91045.3| 399|Caenorhabditis elegans Hypothetical pr... 27 3.5
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 27 3.5
AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical ... 27 3.5
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 27 3.5
U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical pr... 27 4.6
U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical pr... 27 4.6
U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical pr... 27 4.6
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 27 4.6
U88167-7|AAB42229.1| 378|Caenorhabditis elegans Hypothetical pr... 26 8.1
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 62.5 bits (145), Expect = 1e-10
Identities = 36/85 (42%), Positives = 43/85 (50%), Gaps = 18/85 (21%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCP----EGG-----------RDNSNQTCYNCNKSVAXISRNLAPNG 285
SCYNC GH +R+CP EGG R Q CYNC +S ISR +G
Sbjct: 68 SCYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRS-GHISRECTESG 126
Query: 286 T---KTCYVCGKPGHISRDCDEERN 351
+ K CY C + GHISRDC + N
Sbjct: 127 SAEEKRCYQCQETGHISRDCPSQTN 151
Score = 58.0 bits (134), Expect = 2e-09
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 17/84 (20%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPEGGRDNSNQ------TCYNCNKSVAXISRNLAPNGT-------- 288
+CY C + GHI+RNCP G D + TCYNC ++ SR+ G+
Sbjct: 5 NCYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQET-GHFSRDCPKGGSGGGQRGGG 63
Query: 289 ---KTCYVCGKPGHISRDCDEERN 351
+CY CG GH SRDC R+
Sbjct: 64 GGGGSCYNCGGRGHYSRDCPSARS 87
Score = 31.5 bits (68), Expect = 0.21
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 289 KTCYVCGKPGHISRDC 336
+ CY C +PGHISR+C
Sbjct: 4 RNCYKCQQPGHISRNC 19
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 53.2 bits (122), Expect = 6e-08
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTK-----TCYVCGKP 315
+C++C + GH +CP+ +S+ C+ C I G K TC+VC +
Sbjct: 230 ACFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSI-HECKKKGVKGFPYATCFVCKQV 288
Query: 316 GHISRDCDEERN 351
GHISRDC + N
Sbjct: 289 GHISRDCHQNVN 300
Score = 37.5 bits (83), Expect = 0.003
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Frame = +1
Query: 154 CYNCNKTGHIARNCPEGG-RDNSNQTCYNCNKSVAXISRNLAPNGTKT------CYVCGK 312
C+ C H C + G + TC+ C K V ISR+ N C VCG
Sbjct: 256 CFKCGSMEHSIHECKKKGVKGFPYATCFVC-KQVGHISRDCHQNVNGVYPDGGCCNVCGA 314
Query: 313 PGHISRDCDE 342
H+ RDC E
Sbjct: 315 NTHLRRDCPE 324
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISR 330
+C+NC + GH + +CPE ++ + CYNC +PGH SR
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQ----------------------QPGHTSR 196
Query: 331 DCDEER 348
+C EER
Sbjct: 197 ECTEER 202
Score = 36.3 bits (80), Expect = 0.008
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +1
Query: 73 GTARDAESTATCNGTGHIRV-MPNPTPSCYNCNKTGHIARNCP 198
G R C G GH P P C+NC + GH + CP
Sbjct: 236 GEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNECP 278
Score = 33.1 bits (72), Expect(2) = 3e-05
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 202 GGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISRDC 336
GG + C+NC K S P + C+ CG+ GH S +C
Sbjct: 235 GGEERGPMKCFNC-KGEGHRSAE-CPEPPRGCFNCGEQGHRSNEC 277
Score = 30.7 bits (66), Expect(2) = 3e-05
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 154 CYNCNKTGHIARNCPEGGRDNSNQT 228
CYNC + GH +R C E + +T
Sbjct: 185 CYNCQQPGHTSRECTEERKPREGRT 209
Score = 30.3 bits (65), Expect = 0.49
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 154 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNK 246
C+NC GH + CPE R C+NC +
Sbjct: 244 CFNCKGEGHRSAECPEPPRG-----CFNCGE 269
Score = 29.5 bits (63), Expect = 0.86
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 295 CYVCGKPGHISRDCDEERN*HAP 363
C+ C +PGH S DC E R P
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREP 182
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISR 330
+C+NC + GH + +CPE ++ + CYNC +PGH SR
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQ----------------------QPGHTSR 196
Query: 331 DCDEER 348
+C EER
Sbjct: 197 ECTEER 202
Score = 36.3 bits (80), Expect = 0.008
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +1
Query: 73 GTARDAESTATCNGTGHIRV-MPNPTPSCYNCNKTGHIARNCP 198
G R C G GH P P C+NC + GH + CP
Sbjct: 236 GEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNECP 278
Score = 33.1 bits (72), Expect(2) = 3e-05
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 202 GGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISRDC 336
GG + C+NC K S P + C+ CG+ GH S +C
Sbjct: 235 GGEERGPMKCFNC-KGEGHRSAE-CPEPPRGCFNCGEQGHRSNEC 277
Score = 30.7 bits (66), Expect(2) = 3e-05
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 154 CYNCNKTGHIARNCPEGGRDNSNQT 228
CYNC + GH +R C E + +T
Sbjct: 185 CYNCQQPGHTSRECTEERKPREGRT 209
Score = 30.3 bits (65), Expect = 0.49
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 154 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNK 246
C+NC GH + CPE R C+NC +
Sbjct: 244 CFNCKGEGHRSAECPEPPRG-----CFNCGE 269
Score = 29.5 bits (63), Expect = 0.86
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 295 CYVCGKPGHISRDCDEERN*HAP 363
C+ C +PGH S DC E R P
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREP 182
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISR 330
+C+NC + GH + +CPE ++ + CYNC +PGH SR
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQ----------------------QPGHTSR 196
Query: 331 DCDEER 348
+C EER
Sbjct: 197 ECTEER 202
Score = 36.3 bits (80), Expect = 0.008
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +1
Query: 73 GTARDAESTATCNGTGHIRV-MPNPTPSCYNCNKTGHIARNCP 198
G R C G GH P P C+NC + GH + CP
Sbjct: 236 GEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNECP 278
Score = 33.1 bits (72), Expect(2) = 3e-05
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 202 GGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISRDC 336
GG + C+NC K S P + C+ CG+ GH S +C
Sbjct: 235 GGEERGPMKCFNC-KGEGHRSAE-CPEPPRGCFNCGEQGHRSNEC 277
Score = 30.7 bits (66), Expect(2) = 3e-05
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 154 CYNCNKTGHIARNCPEGGRDNSNQT 228
CYNC + GH +R C E + +T
Sbjct: 185 CYNCQQPGHTSRECTEERKPREGRT 209
Score = 30.3 bits (65), Expect = 0.49
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 154 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNK 246
C+NC GH + CPE R C+NC +
Sbjct: 244 CFNCKGEGHRSAECPEPPRG-----CFNCGE 269
Score = 29.5 bits (63), Expect = 0.86
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 295 CYVCGKPGHISRDCDEERN*HAP 363
C+ C +PGH S DC E R P
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREP 182
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 43.2 bits (97), Expect = 7e-05
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPE-GGRDNSNQTCYN-CNKSVAXISRNLAPNGTKTCYVCGKPGHI 324
+C+NC++ GH A CP G+ NQ ++ + S+ +NL+ TCY CG+ GH
Sbjct: 205 TCHNCHERGHKATTCPHLPGQTRQNQDHHHRVDLSLIPDKKNLS---DVTCYKCGEKGHY 261
Query: 325 SRDC 336
+ C
Sbjct: 262 ANRC 265
Score = 27.1 bits (57), Expect = 4.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPEG 204
+CY C + GH A C +G
Sbjct: 251 TCYKCGEKGHYANRCHKG 268
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 42.7 bits (96), Expect = 9e-05
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISR 330
+C+NC + GH + +CPE ++ + CYNC +PGH SR
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQ----------------------QPGHNSR 295
Query: 331 DCDEER 348
DC EER
Sbjct: 296 DCPEER 301
Score = 42.7 bits (96), Expect = 9e-05
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISR 330
+C+NC + GH + +CPE ++ + CYNC +PGH SR
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQ----------------------QPGHNSR 409
Query: 331 DCDEER 348
DC EER
Sbjct: 410 DCPEER 415
Score = 39.5 bits (88), Expect = 8e-04
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +1
Query: 46 GGNASVHRPGTARDAESTATCNGTGHIRV-MPNPTPSCYNCNKTGHIARNCP 198
GGNA R C G GH P P C+NC + GH + CP
Sbjct: 438 GGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNECP 489
Score = 30.3 bits (65), Expect = 0.49
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 154 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNK 246
C+NC GH + CPE R C+NC +
Sbjct: 455 CFNCKGEGHRSAECPEPPRG-----CFNCGE 480
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 295 CYVCGKPGHISRDCDEERN*HAP 363
C+ C +PGH S DC E + P
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREP 281
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 295 CYVCGKPGHISRDCDEERN*HAP 363
C+ C +PGH S DC E + P
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREP 395
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 229 CYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISRDC 336
C+NC K S P + C+ CG+ GH S +C
Sbjct: 455 CFNC-KGEGHRSAE-CPEPPRGCFNCGEQGHRSNEC 488
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 42.7 bits (96), Expect = 9e-05
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISR 330
+C+NC + GH + +CPE ++ + CYNC +PGH SR
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQ----------------------QPGHNSR 295
Query: 331 DCDEER 348
DC EER
Sbjct: 296 DCPEER 301
Score = 42.7 bits (96), Expect = 9e-05
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISR 330
+C+NC + GH + +CPE ++ + CYNC +PGH SR
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQ----------------------QPGHNSR 409
Query: 331 DCDEER 348
DC EER
Sbjct: 410 DCPEER 415
Score = 39.5 bits (88), Expect = 8e-04
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +1
Query: 46 GGNASVHRPGTARDAESTATCNGTGHIRV-MPNPTPSCYNCNKTGHIARNCP 198
GGNA R C G GH P P C+NC + GH + CP
Sbjct: 438 GGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNECP 489
Score = 30.3 bits (65), Expect = 0.49
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 154 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNK 246
C+NC GH + CPE R C+NC +
Sbjct: 455 CFNCKGEGHRSAECPEPPRG-----CFNCGE 480
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 295 CYVCGKPGHISRDCDEERN*HAP 363
C+ C +PGH S DC E + P
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREP 281
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 295 CYVCGKPGHISRDCDEERN*HAP 363
C+ C +PGH S DC E + P
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREP 395
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 229 CYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISRDC 336
C+NC K S P + C+ CG+ GH S +C
Sbjct: 455 CFNC-KGEGHRSAE-CPEPPRGCFNCGEQGHRSNEC 488
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 42.7 bits (96), Expect = 9e-05
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISR 330
+C+NC + GH + +CPE ++ + CYNC +PGH SR
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQ----------------------QPGHNSR 295
Query: 331 DCDEER 348
DC EER
Sbjct: 296 DCPEER 301
Score = 42.7 bits (96), Expect = 9e-05
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISR 330
+C+NC + GH + +CPE ++ + CYNC +PGH SR
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQ----------------------QPGHNSR 409
Query: 331 DCDEER 348
DC EER
Sbjct: 410 DCPEER 415
Score = 39.5 bits (88), Expect = 8e-04
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +1
Query: 46 GGNASVHRPGTARDAESTATCNGTGHIRV-MPNPTPSCYNCNKTGHIARNCP 198
GGNA R C G GH P P C+NC + GH + CP
Sbjct: 438 GGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNECP 489
Score = 30.3 bits (65), Expect = 0.49
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 154 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNK 246
C+NC GH + CPE R C+NC +
Sbjct: 455 CFNCKGEGHRSAECPEPPRG-----CFNCGE 480
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 295 CYVCGKPGHISRDCDEERN*HAP 363
C+ C +PGH S DC E + P
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREP 281
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 295 CYVCGKPGHISRDCDEERN*HAP 363
C+ C +PGH S DC E + P
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREP 395
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 229 CYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISRDC 336
C+NC K S P + C+ CG+ GH S +C
Sbjct: 455 CFNC-KGEGHRSAE-CPEPPRGCFNCGEQGHRSNEC 488
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 40.7 bits (91), Expect = 3e-04
Identities = 18/69 (26%), Positives = 36/69 (52%)
Frame = +1
Query: 139 NPTPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPG 318
NP+ C +C + G C + +DN++Q C C +S ++ + + C+ C + G
Sbjct: 626 NPSDRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMA-SCFKLKNRACFRCNEMG 684
Query: 319 HISRDCDEE 345
HI+ +C ++
Sbjct: 685 HIAWNCPKK 693
Score = 33.9 bits (74), Expect = 0.040
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPEGGRDNSNQ 225
+C+ CN+ GHIA NCP+ + S +
Sbjct: 676 ACFRCNEMGHIAWNCPKKNENTSEK 700
Score = 30.3 bits (65), Expect = 0.49
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 21 ENSQAGFNRRECFSAPTGHCARCREYGYM*WH 116
E Q+G++ CF C RC E G++ W+
Sbjct: 658 ECQQSGWHMASCFKLKNRACFRCNEMGHIAWN 689
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 40.7 bits (91), Expect = 3e-04
Identities = 18/69 (26%), Positives = 36/69 (52%)
Frame = +1
Query: 139 NPTPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPG 318
NP+ C +C + G C + +DN++Q C C +S ++ + + C+ C + G
Sbjct: 529 NPSDRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMA-SCFKLKNRACFRCNEMG 587
Query: 319 HISRDCDEE 345
HI+ +C ++
Sbjct: 588 HIAWNCPKK 596
Score = 33.9 bits (74), Expect = 0.040
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPEGGRDNSNQ 225
+C+ CN+ GHIA NCP+ + S +
Sbjct: 579 ACFRCNEMGHIAWNCPKKNENTSEK 603
Score = 30.3 bits (65), Expect = 0.49
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 21 ENSQAGFNRRECFSAPTGHCARCREYGYM*WH 116
E Q+G++ CF C RC E G++ W+
Sbjct: 561 ECQQSGWHMASCFKLKNRACFRCNEMGHIAWN 592
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 40.7 bits (91), Expect = 3e-04
Identities = 18/69 (26%), Positives = 36/69 (52%)
Frame = +1
Query: 139 NPTPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPG 318
NP+ C +C + G C + +DN++Q C C +S ++ + + C+ C + G
Sbjct: 540 NPSDRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMA-SCFKLKNRACFRCNEMG 598
Query: 319 HISRDCDEE 345
HI+ +C ++
Sbjct: 599 HIAWNCPKK 607
Score = 33.9 bits (74), Expect = 0.040
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPEGGRDNSNQ 225
+C+ CN+ GHIA NCP+ + S +
Sbjct: 590 ACFRCNEMGHIAWNCPKKNENTSEK 614
Score = 30.3 bits (65), Expect = 0.49
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 21 ENSQAGFNRRECFSAPTGHCARCREYGYM*WH 116
E Q+G++ CF C RC E G++ W+
Sbjct: 572 ECQQSGWHMASCFKLKNRACFRCNEMGHIAWN 603
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 39.9 bits (89), Expect = 6e-04
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Frame = +1
Query: 106 CNGTGHIRV---MPN-PTPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKS---VAXIS 264
C GHI P P C NC + GH A +C + C NC
Sbjct: 575 CGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRG--PCRNCGIEGHFAVDCD 632
Query: 265 RNLAPNGTKTCYVCGKPGHISRDCDEER 348
+ P G C CG+ GH ++DC ER
Sbjct: 633 QPKVPRGP--CRNCGQEGHFAKDCQNER 658
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +1
Query: 154 CYNCNKTGHIARNC--PEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPGHIS 327
C+NC + GHI++ C P+ R + C + + P G C CG GH +
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPC-RNCEQLGHFASDCDQPRVPRG--PCRNCGIEGHFA 628
Query: 328 RDCDEER 348
DCD+ +
Sbjct: 629 VDCDQPK 635
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 127 RVMPNPTPSCYNCNKTGHIARNCPEGGRD 213
RV PT C C + GH CP +D
Sbjct: 658 RVRMEPTEPCRRCAEEGHWGYECPTRPKD 686
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 39.9 bits (89), Expect = 6e-04
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Frame = +1
Query: 106 CNGTGHIRV---MPN-PTPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKS---VAXIS 264
C GHI P P C NC + GH A +C + C NC
Sbjct: 575 CGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRG--PCRNCGIEGHFAVDCD 632
Query: 265 RNLAPNGTKTCYVCGKPGHISRDCDEER 348
+ P G C CG+ GH ++DC ER
Sbjct: 633 QPKVPRGP--CRNCGQEGHFAKDCQNER 658
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +1
Query: 154 CYNCNKTGHIARNC--PEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPGHIS 327
C+NC + GHI++ C P+ R + C + + P G C CG GH +
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPC-RNCEQLGHFASDCDQPRVPRG--PCRNCGIEGHFA 628
Query: 328 RDCDEER 348
DCD+ +
Sbjct: 629 VDCDQPK 635
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 127 RVMPNPTPSCYNCNKTGHIARNCPEGGRD 213
RV PT C C + GH CP +D
Sbjct: 658 RVRMEPTEPCRRCAEEGHWGYECPTRPKD 686
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +1
Query: 196 PEGGRDNSNQTCYNCNKSVAXISRNLAPN---GTKTCYVCGKPGHISRDCDEERN*HAP 363
P G + + C+ C K +++ PN K CY CG H+S C E R H P
Sbjct: 102 PLGRKKAVSLRCFRCGKFATHKAKS-CPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 159
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +1
Query: 196 PEGGRDNSNQTCYNCNKSVAXISRNLAPN---GTKTCYVCGKPGHISRDCDEERN*HAP 363
P G + + C+ C K +++ PN K CY CG H+S C E R H P
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKS-CPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +1
Query: 196 PEGGRDNSNQTCYNCNKSVAXISRNLAPN---GTKTCYVCGKPGHISRDCDEERN*HAP 363
P G + + C+ C K +++ PN K CY CG H+S C E R H P
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKS-CPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +1
Query: 196 PEGGRDNSNQTCYNCNKSVAXISRNLAPN---GTKTCYVCGKPGHISRDCDEERN*HAP 363
P G + + C+ C K +++ PN K CY CG H+S C E R H P
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKS-CPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 37.1 bits (82), Expect = 0.004
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPEGGRDNSNQ 225
+CY C + GHI+RNCP G D +
Sbjct: 5 NCYKCQQPGHISRNCPNGESDGGRR 29
Score = 31.5 bits (68), Expect = 0.21
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 289 KTCYVCGKPGHISRDC 336
+ CY C +PGHISR+C
Sbjct: 4 RNCYKCQQPGHISRNC 19
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 35.1 bits (77), Expect = 0.017
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Frame = +1
Query: 58 SVHRPGTARDAESTATCNGTGHIRVMPNPTPSCYNCNKTGHIARNCP--EGGRDNSNQTC 231
S+HR + D ST C+ R + S Y ++ P E + TC
Sbjct: 148 SIHR---SDDQVSTENCSAKDEERDRDSGGVSSYGNKRSDEFCGTSPILEAKGFGISNTC 204
Query: 232 YNCNKSVAXISRNLAPNGTKTCYVCGKPGHISRDC 336
+NC K + AP + C CG P H + +C
Sbjct: 205 FNCKKYGHRATECSAPQ--RECANCGDPNHRANEC 237
Score = 30.7 bits (66), Expect = 0.37
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCN---KSVAXISRNLAPNGTKTCYV 303
+C+NC K GH A C R+ +N C + N A S+N TK YV
Sbjct: 203 TCFNCKKYGHRATECSAPQRECAN--CGDPNHRANECASWSKNGVQEPTKVTYV 254
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 35.1 bits (77), Expect = 0.017
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Frame = +1
Query: 58 SVHRPGTARDAESTATCNGTGHIRVMPNPTPSCYNCNKTGHIARNCP--EGGRDNSNQTC 231
S+HR + D ST C+ R + S Y ++ P E + TC
Sbjct: 148 SIHR---SDDQVSTENCSAKDEERDRDSGGVSSYGNKRSDEFCGTSPILEAKGFGISNTC 204
Query: 232 YNCNKSVAXISRNLAPNGTKTCYVCGKPGHISRDC 336
+NC K + AP + C CG P H + +C
Sbjct: 205 FNCKKYGHRATECSAPQ--RECANCGDPNHRANEC 237
Score = 30.7 bits (66), Expect = 0.37
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCN---KSVAXISRNLAPNGTKTCYV 303
+C+NC K GH A C R+ +N C + N A S+N TK YV
Sbjct: 203 TCFNCKKYGHRATECSAPQRECAN--CGDPNHRANECASWSKNGVQEPTKVTYV 254
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 32.7 bits (71), Expect = 0.093
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 142 PTPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRN 270
P P C+ C + GHI+ CP+ D Q N SV + R+
Sbjct: 606 PPPQCFTCGEMGHISTYCPK-RIDRVQQQQTQPNSSVNDVERD 647
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 31.5 bits (68), Expect = 0.21
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +1
Query: 148 PSCYNCNKTGHIARNCPEGGRDN 216
P CY C GH++++CP+ ++
Sbjct: 311 PYCYKCKVVGHVSKDCPQSSTNS 333
Score = 26.6 bits (56), Expect = 6.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 295 CYVCGKPGHISRDCDE 342
CY C GH+S+DC +
Sbjct: 313 CYKCKVVGHVSKDCPQ 328
>Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical
protein F36F2.3b protein.
Length = 363
Score = 30.3 bits (65), Expect = 0.49
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 136 PNPTPSCYNCNKTGHIARNCP 198
P PT +C C++ GH +NCP
Sbjct: 152 PPPTYTCNRCSQPGHWYKNCP 172
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 30.3 bits (65), Expect = 0.49
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 136 PNPTPSCYNCNKTGHIARNCP 198
P PT +C C++ GH +NCP
Sbjct: 152 PPPTYTCNRCSQPGHWYKNCP 172
>AF040647-6|AAR30205.3| 436|Caenorhabditis elegans Hypothetical
protein F54D12.7 protein.
Length = 436
Score = 30.3 bits (65), Expect = 0.49
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 139 NPTPSCYNCNKT 174
NPTP+C NCNKT
Sbjct: 154 NPTPTCQNCNKT 165
>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical
protein ZK520.3a protein.
Length = 1383
Score = 29.5 bits (63), Expect = 0.86
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 4 NYGSRLRIRRLASTGGNASVHRPGTARDA 90
N+GSRLR+ R+ ++ N S+ P R+A
Sbjct: 485 NFGSRLRLHRIRNSEDNVSIEFPEANRNA 513
>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical
protein ZK520.3a protein.
Length = 1383
Score = 29.5 bits (63), Expect = 0.86
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 4 NYGSRLRIRRLASTGGNASVHRPGTARDA 90
N+GSRLR+ R+ ++ N S+ P R+A
Sbjct: 485 NFGSRLRLHRIRNSEDNVSIEFPEANRNA 513
>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
protein F53B6.2a protein.
Length = 1045
Score = 29.5 bits (63), Expect = 0.86
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 12/87 (13%)
Frame = +1
Query: 10 GSRLRIRRLASTGGNASVHRPGT--------ARDAESTATCNGTGHIRVMPNPTPSCYNC 165
G+R R T N +VH P T A + +T G T SC
Sbjct: 254 GTRKREVYCVQTAHNVTVHVPDTFCENGTRPAAEENCVSTSCGRWEAGKWSKCTASCGQG 313
Query: 166 NKTGHIA----RNCPEGGRDNSNQTCY 234
+ H+A +C EGGR TCY
Sbjct: 314 VRRRHVACVGGSDCDEGGRPRQETTCY 340
>U40030-1|AAR12977.1| 235|Caenorhabditis elegans Hypothetical
protein T13C2.4 protein.
Length = 235
Score = 29.5 bits (63), Expect = 0.86
Identities = 22/88 (25%), Positives = 32/88 (36%)
Frame = +1
Query: 7 YGSRLRIRRLASTGGNASVHRPGTARDAESTATCNGTGHIRVMPNPTPSCYNCNKTGHIA 186
Y S+LR S+ N S+ G + G+G+ MP PT NC + G
Sbjct: 41 YSSKLRFAVSCSSNMNRSMEAHGILKKRGFNIESYGSGNQVKMPGPTVDKPNCYEFGPTT 100
Query: 187 RNCPEGGRDNSNQTCYNCNKSVAXISRN 270
N + Y N + + RN
Sbjct: 101 YEDIYADLTNKDLHLYTQNGLLHMVDRN 128
>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
Length = 1383
Score = 29.5 bits (63), Expect = 0.86
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 4 NYGSRLRIRRLASTGGNASVHRPGTARDA 90
N+GSRLR+ R+ ++ N S+ P R+A
Sbjct: 485 NFGSRLRLHRIRNSEDNVSIEFPEANRNA 513
>AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical
protein Y48G1BM.5 protein.
Length = 994
Score = 29.5 bits (63), Expect = 0.86
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +1
Query: 193 CPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTKTCYVCGKPGHISRDCDEERN*HAPNNS 372
CP +D+ QTC + R NG C +C P HI+ +C ++ NS
Sbjct: 925 CPPCKKDHPLQTC---TMGAIEVKRFCINNGR--CTICSSPSHITGNCSYAQSMQDNTNS 979
>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 73 GTARDAESTATC-NGTGHIRVMPNPTPSCYNCNKTGHIARNCPEGGRDNSNQ 225
G+ A ++AT N +R +P PT + + N+ A N + DN++Q
Sbjct: 1917 GSTAPAPASATAGNNNSQVRSVPPPTTTTSSSNQESSPASNSSKKSNDNTDQ 1968
>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
F36A2.13 protein.
Length = 2944
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 73 GTARDAESTATC-NGTGHIRVMPNPTPSCYNCNKTGHIARNCPEGGRDNSNQ 225
G+ A ++AT N +R +P PT + + N+ A N + DN++Q
Sbjct: 1917 GSTAPAPASATAGNNNSQVRSVPPPTTTTSSSNQESSPASNSSKKSNDNTDQ 1968
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 29.1 bits (62), Expect = 1.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 295 CYVCGKPGHISRDCDEERN*HAPN 366
CY CGK GH + +C +++ + N
Sbjct: 411 CYYCGKRGHTANECRRKKSDESQN 434
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +1
Query: 151 SCYNCNKTGHIARNCPEGGRD---NSNQTCYNCNKSVAXISRNLA 276
+CY C K GH A C D N + + ++ +A + R LA
Sbjct: 410 NCYYCGKRGHTANECRRKKSDESQNGERQDPSQSEQIAALRRQLA 454
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 28.3 bits (60), Expect = 2.0
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 154 CYNCNKTGHIARNCPE 201
C++C + GHI+R CP+
Sbjct: 170 CFHCQEHGHISRMCPK 185
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +1
Query: 274 APNGTKT--CYVCGKPGHISRDCDEERN*HA 360
APN T C CG GHIS+DC + +A
Sbjct: 446 APNVTNQIKCTNCGAFGHISKDCKNPKGMYA 476
Score = 27.1 bits (57), Expect = 4.6
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Frame = +1
Query: 16 RLRIRRLASTGGNASVHRPGTARDAESTATCNGTGH----IRVMPNPTPS--CYNCNKTG 177
+L++R LA G RP + + C H PN T C NC G
Sbjct: 406 KLQLRELALLNGT---FRPEDLANGARCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFG 462
Query: 178 HIARNC--PEG 204
HI+++C P+G
Sbjct: 463 HISKDCKNPKG 473
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +1
Query: 100 ATCNGTGHIRVMPNPTPSCYNCNKTGHIARNCPEGGRDNSNQTCYNC 240
A NGT + N C NC H + CP+ + C NC
Sbjct: 413 ALLNGTFRPEDLANGA-RCSNCGSDEHKSWECPDAPNVTNQIKCTNC 458
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +1
Query: 274 APNGTKT--CYVCGKPGHISRDCDEERN*HA 360
APN T C CG GHIS+DC + +A
Sbjct: 446 APNVTNQIKCTNCGAFGHISKDCKNPKGMYA 476
Score = 27.1 bits (57), Expect = 4.6
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Frame = +1
Query: 16 RLRIRRLASTGGNASVHRPGTARDAESTATCNGTGH----IRVMPNPTPS--CYNCNKTG 177
+L++R LA G RP + + C H PN T C NC G
Sbjct: 406 KLQLRELALLNGT---FRPEDLANGARCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFG 462
Query: 178 HIARNC--PEG 204
HI+++C P+G
Sbjct: 463 HISKDCKNPKG 473
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +1
Query: 100 ATCNGTGHIRVMPNPTPSCYNCNKTGHIARNCPEGGRDNSNQTCYNC 240
A NGT + N C NC H + CP+ + C NC
Sbjct: 413 ALLNGTFRPEDLANGA-RCSNCGSDEHKSWECPDAPNVTNQIKCTNC 458
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 27.9 bits (59), Expect = 2.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 21 ENSQAGFNRRECFSAPTGHCARC 89
E+ ++GF R F P HC +C
Sbjct: 699 ESCESGFRRETKFGGPFNHCIKC 721
>AL132862-14|CAB60548.1| 541|Caenorhabditis elegans Hypothetical
protein Y73F8A.20 protein.
Length = 541
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 300 RLRQARTYLSRLRRGAELTRAQQLL 374
R+R RT +++ RR ++TR Q+LL
Sbjct: 430 RIRHRRTIITKKRRNTKITRKQRLL 454
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
F54F3.1 protein.
Length = 1584
Score = 27.5 bits (58), Expect = 3.5
Identities = 16/71 (22%), Positives = 25/71 (35%)
Frame = +1
Query: 31 RLASTGGNASVHRPGTARDAESTATCNGTGHIRVMPNPTPSCYNCNKTGHIARNCPEGGR 210
R+ +H A + +G G+ + TP C NC+ + A+N G
Sbjct: 1162 RICHANAQCVMHHDTNAYECICKPGSSGDGYTKCDVIETPRCTNCSIHAYCAQNPTSGAY 1221
Query: 211 DNSNQTCYNCN 243
YN N
Sbjct: 1222 QCKCNAGYNGN 1232
>Z54281-2|CAA91045.3| 399|Caenorhabditis elegans Hypothetical
protein F46C5.3 protein.
Length = 399
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +1
Query: 154 CYN-CNKTGHIARNCPEGGRDNSNQTCYNCN 243
CY+ C G +A NC GG N N C CN
Sbjct: 236 CYDSCRNAGQLA-NCANGGIPNPN-NCQVCN 264
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 27.5 bits (58), Expect = 3.5
Identities = 10/46 (21%), Positives = 20/46 (43%)
Frame = +1
Query: 154 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSVAXISRNLAPNGTK 291
C+ C++ GH +CP+ + + N + + N + G K
Sbjct: 1357 CHQCHRIGHFVESCPQRALAKEARKRFGSNSTNSSYRSNDSGRGFK 1402
>AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical
protein Y48B6A.3 protein.
Length = 892
Score = 27.5 bits (58), Expect = 3.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 259 ISRNLAPNGTKTCYVCGKPGHISRDCDEERN 351
I PN + C +CG+ GH ++C N
Sbjct: 252 IREEFVPNQPRACDLCGQYGHELKECRGAEN 282
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -3
Query: 375 LRVVG-RVLIPLLVAVARDMSGLAADV 298
L+V+ +VL+P LV +ARD LAA+V
Sbjct: 781 LQVISEQVLVPALVTMARDSEQLAAEV 807
>U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical
protein C17H11.6c protein.
Length = 778
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 283 GTKTCYVCGKPGHISRDCDEER 348
GT CY C + H ++ CDE R
Sbjct: 201 GTLFCYHCKREWHSNQTCDEAR 222
>U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical
protein C17H11.6b protein.
Length = 796
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 283 GTKTCYVCGKPGHISRDCDEER 348
GT CY C + H ++ CDE R
Sbjct: 201 GTLFCYHCKREWHSNQTCDEAR 222
>U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical
protein C17H11.6a protein.
Length = 793
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 283 GTKTCYVCGKPGHISRDCDEER 348
GT CY C + H ++ CDE R
Sbjct: 201 GTLFCYHCKREWHSNQTCDEAR 222
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 27.1 bits (57), Expect = 4.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 154 CYNCNKTGHIARNC 195
C+ C GH+ARNC
Sbjct: 576 CHYCKNVGHMARNC 589
>U88167-7|AAB42229.1| 378|Caenorhabditis elegans Hypothetical
protein D2092.2 protein.
Length = 378
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 284 APRLATSAASPDISLATATRSGINTRPTT 370
APR++T++ P + RS INT P++
Sbjct: 276 APRVSTASPDPPSFVLPTARSPINTSPSS 304
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,583,569
Number of Sequences: 27780
Number of extensions: 174016
Number of successful extensions: 719
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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