Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H06
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23450-6|AAK31469.1|  790|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AC006816-2|AAK85508.1|  352|Caenorhabditis elegans Hypothetical ...    28   5.6  
AC006816-1|AAN39661.1|  401|Caenorhabditis elegans Hypothetical ...    28   5.6  
AB071420-1|BAB86940.1|  401|Caenorhabditis elegans 2-amino-3-car...    28   5.6  
Z82283-4|CAB05286.1|  689|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical p...    27   7.4  
DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagella...    27   7.4  
U59211-1|AAB09670.1|  420|Caenorhabditis elegans embryonic membr...    27   9.7  
U53343-3|AAA96220.2|  420|Caenorhabditis elegans Innexin protein...    27   9.7  

>U23450-6|AAK31469.1|  790|Caenorhabditis elegans Hypothetical
           protein C30B5.5 protein.
          Length = 790

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 235 LKSKTYDAWCVIFAYVIRQTLTYYFKLMHRQK 330
           L+ K + A C++F  VI   L+ YF   H QK
Sbjct: 725 LRQKVFIALCLVFCVVIAWILSCYFLKKHSQK 756


>AC006816-2|AAK85508.1|  352|Caenorhabditis elegans Hypothetical
           protein Y71D11A.3a protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 341 SETASAICRLLPVDILVDLPRMSSVLVH 424
           SETA AIC +L  +ILV  P++     H
Sbjct: 209 SETAQAICSVLMGNILVLFPKLKLCFAH 236


>AC006816-1|AAN39661.1|  401|Caenorhabditis elegans Hypothetical
           protein Y71D11A.3b protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 341 SETASAICRLLPVDILVDLPRMSSVLVH 424
           SETA AIC +L  +ILV  P++     H
Sbjct: 258 SETAQAICSVLMGNILVLFPKLKLCFAH 285


>AB071420-1|BAB86940.1|  401|Caenorhabditis elegans
           2-amino-3-carboxylmuconate-6-semialdehydedecarboxylase
           protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 341 SETASAICRLLPVDILVDLPRMSSVLVH 424
           SETA AIC +L  +ILV  P++     H
Sbjct: 258 SETAQAICSVLMGNILVLFPKLKLCFAH 285


>Z82283-4|CAB05286.1|  689|Caenorhabditis elegans Hypothetical
           protein T23G4.4 protein.
          Length = 689

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 487 VIFVEKKKNVNEENYFSKYE*MYQDTRHTWKVNQNI 380
           +IF   + +  EENYF K         HTW ++  I
Sbjct: 115 LIFESNRPHTGEENYFEKLSIASDLFTHTWSLSVEI 150


>Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical
           protein F23B2.4 protein.
          Length = 1192

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 280 VIRQTLTYYFKLMHRQKEVFKRNGFRN 360
           ++R T+  Y K      ++FK NGF N
Sbjct: 656 ILRATILAYTKKFREAAKIFKENGFEN 682


>DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagellar
           transport protein protein.
          Length = 1192

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 280 VIRQTLTYYFKLMHRQKEVFKRNGFRN 360
           ++R T+  Y K      ++FK NGF N
Sbjct: 656 ILRATILAYTKKFREAAKIFKENGFEN 682


>U59211-1|AAB09670.1|  420|Caenorhabditis elegans embryonic membrane
           protein protein.
          Length = 420

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 211 ISRELSRSLKSKTYDAWCVIFAYVIRQTLTYYFKLM 318
           I R LS + K KT+D      +YV   TL  +F +M
Sbjct: 7   IDRWLSETFKPKTFDDAVDRLSYVTTATLLAFFSIM 42


>U53343-3|AAA96220.2|  420|Caenorhabditis elegans Innexin protein 3
           protein.
          Length = 420

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 211 ISRELSRSLKSKTYDAWCVIFAYVIRQTLTYYFKLM 318
           I R LS + K KT+D      +YV   TL  +F +M
Sbjct: 7   IDRWLSETFKPKTFDDAVDRLSYVTTATLLAFFSIM 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,379,522
Number of Sequences: 27780
Number of extensions: 235232
Number of successful extensions: 573
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)