Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H05
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    33   0.043
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    29   0.70 
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    27   1.6  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.9  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    25   8.6  
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    25   8.6  

>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 32.7 bits (71), Expect = 0.043
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = +3

Query: 327 CRDYIRGYCTRDNCRYIH----EIPPIAFLKDLFRFC 425
           CR ++ G C   NCRY+H    E  PI F    + FC
Sbjct: 264 CRYFLLGKCNNPNCRYVHIHYSENAPICFEFAKYGFC 300


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = +3

Query: 336 YIRGYCTRDNC-RYIHEIPPIAFLKDLFRFCHDFQNKGCYRINCKFIHSSIEEEDHFYSS 512
           Y++   +RD+  RY+     I  L +LF  C D +N       C  I S ++  D     
Sbjct: 188 YMQSIQSRDSLVRYVSNENYIDRLIELFPLCEDLENTDDLHRLCSIIKSFVQLNDAPLLE 247

Query: 513 GVFPRDHRNLPVCQA*FTDP 572
            +F  D + + V      DP
Sbjct: 248 SLFSNDEKLMCVAGILEYDP 267


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 402 LKDLFRFCHDFQNKGCYRINCKFIHSSIEEE 494
           L+D  +F HD+    CYRI  K ++ + EEE
Sbjct: 357 LQDCEKFHHDYTEYHCYRIG-KPLYQNYEEE 386


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -3

Query: 392 RWNLMYISAIISRAITTNVISAIITGDCSQF-IIIVRHSVIWVSRHN 255
           +W+   +  + SR   T  ++ +I G C++   ++VRHS I+VS H+
Sbjct: 299 KWSPPIVPGLHSRVEFTIPVNDLIHGSCTENPHLLVRHS-IYVSIHS 344


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 125 FIYVVFTIVDELVNHQRQYILLVKKYTTEYSHINI 21
           F   VF++ DE  NH+++   +++K   +   INI
Sbjct: 341 FTEQVFSVADEPNNHRKKISQVLRKINRDIELINI 375


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +3

Query: 228 NCMKIN*TMVVTRNPDDTMTDDNDKLTTIAGNYCRDYIRGYCTRDNCRYIHEIPPIAFLK 407
           N +K+N    VT +  D   +  D L++   +    +I  +C+R    Y  E+    F++
Sbjct: 5   NLIKLNHDPTVTYSTKDDADELFDDLSSSPLHENVSWISWFCSRPGREYFVEVKE-DFIE 63

Query: 408 DLF 416
           DLF
Sbjct: 64  DLF 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,884
Number of Sequences: 5004
Number of extensions: 46141
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)