Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_H05
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 43 2e-04
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 32 0.31
07_01_1134 + 10614565-10615821 30 1.6
07_01_1143 - 10711023-10711884,10713603-10713826,10714253-107145... 29 2.2
06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353... 29 2.2
12_02_0556 + 20415683-20416841,20417563-20417726,20417837-204179... 29 3.8
08_01_0662 + 5714108-5714147,5714336-5715669,5716482-5716673,571... 29 3.8
06_03_0231 - 18500825-18501117,18502329-18502746 29 3.8
05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889 29 3.8
04_04_1257 - 32155935-32156526,32156655-32157067 29 3.8
04_01_0590 + 7793958-7794148,7794826-7794967,7799292-7800548 29 3.8
05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036,980... 28 5.0
10_05_0023 + 8171023-8171782,8172658-8172950 28 6.6
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 28 6.6
03_05_0811 - 27867228-27867701,27868313-27868497,27869123-27869393 27 8.7
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 327 CRDYIRGYCTR--DNCRYIHEIPPIAFLKDLFRFCHDFQNKGCYRINCKFIH 476
CRD+ RG C+R + CR++H P L+D C DF C R +C++ H
Sbjct: 186 CRDFTRGRCSRSANECRFLHHSP----LEDCAIVCQDFLRGRCDRKSCRYSH 233
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +3
Query: 264 RNPDDTMTDDNDKLTTIAGNYCRDYIRGYCTRDN--CRYIHEIPPIAFLKD-LFRFCHDF 434
R PD ND + CRD++R C R + C+Y H P +A +D C D
Sbjct: 92 RYPDGKRRRHNDLNVEV----CRDFLRDRCARADIECKYAHPHPTVAVDRDSKVTACADS 147
Query: 435 QNKGCYR-INCKFIH 476
C+R C++ H
Sbjct: 148 LRNNCFRGRTCRYYH 162
Score = 32.7 bits (71), Expect = 0.23
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 327 CRDYIRGYCTRDNCRYIH 380
CRDY++ C R++CR+ H
Sbjct: 287 CRDYLKNMCNRESCRFAH 304
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 32.3 bits (70), Expect = 0.31
Identities = 10/20 (50%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +3
Query: 327 CRDYIRGYCTRD-NCRYIHE 383
C D+++G C+R NCRY+H+
Sbjct: 320 CHDFVKGRCSRGANCRYVHD 339
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +3
Query: 327 CRDYIRGYCTR-DNCRYIHE 383
CRD++ G C R NCR+ HE
Sbjct: 235 CRDFVAGRCRRGSNCRFPHE 254
>07_01_1134 + 10614565-10615821
Length = 418
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +3
Query: 381 EIPPIAFLKDLFRFCHDFQNKGCYRINCKFIHS 479
++ + L++ FCHD + +G Y +NC ++++
Sbjct: 68 QVNELPMLEEDVPFCHDCREQGHYALNCPWVYA 100
>07_01_1143 -
10711023-10711884,10713603-10713826,10714253-10714522,
10715071-10715175
Length = 486
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +3
Query: 327 CRDYIRGYCTRD-NCRYIHEIP 389
C Y+RG CTR C Y HE+P
Sbjct: 163 CSFYVRGECTRGAECPYRHEMP 184
>06_01_0493 -
3536207-3537056,3537603-3537826,3538234-3538503,
3539042-3539146
Length = 482
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +3
Query: 327 CRDYIRGYCTRD-NCRYIHEIP 389
C Y+RG CTR C Y HE+P
Sbjct: 163 CSFYVRGECTRGAECPYRHEMP 184
>12_02_0556 +
20415683-20416841,20417563-20417726,20417837-20417926,
20427889-20429145
Length = 889
Score = 28.7 bits (61), Expect = 3.8
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +3
Query: 420 FCHDFQNKGCYRINCKFIHS 479
FCHD + +G Y +NC ++++
Sbjct: 552 FCHDCREQGHYALNCPWVYA 571
>08_01_0662 +
5714108-5714147,5714336-5715669,5716482-5716673,
5716769-5716958,5717398-5717477
Length = 611
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Frame = +3
Query: 273 DDTMTDD---NDKLTTIAGNYCRDYIRGYCTRDNCRYIHEIPPIAF--LKDLFRFCHDFQ 437
DD DD ++ L + GN DY G D+ +HE IA + +CHD +
Sbjct: 362 DDDDNDDILYDEYLNSRHGNLVDDYNYG-SDIDSDDDLHEYSQIAHECRGGRYGYCHDSK 420
Query: 438 NKGCYRINCKFIHS 479
+G Y CK S
Sbjct: 421 RRGSYYETCKLADS 434
>06_03_0231 - 18500825-18501117,18502329-18502746
Length = 236
Score = 28.7 bits (61), Expect = 3.8
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +3
Query: 420 FCHDFQNKGCYRINCKFIHS 479
FCHD + +G Y +NC ++++
Sbjct: 40 FCHDCREQGHYALNCPWVYA 59
>05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889
Length = 493
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +3
Query: 315 AGNYCRDYIRGYCTR-DNCRYIHE 383
A N C Y +C++ DNC Y+HE
Sbjct: 93 AANPCYFYYNSHCSKGDNCPYLHE 116
>04_04_1257 - 32155935-32156526,32156655-32157067
Length = 334
Score = 28.7 bits (61), Expect = 3.8
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +3
Query: 420 FCHDFQNKGCYRINCKFIHS 479
FCHD + +G Y +NC ++++
Sbjct: 40 FCHDCREQGHYALNCPWVYA 59
>04_01_0590 + 7793958-7794148,7794826-7794967,7799292-7800548
Length = 529
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 420 FCHDFQNKGCYRINCKFIHSSIEEEDHFYSSG 515
FCHD + +G Y +NC +++ ++E F +G
Sbjct: 192 FCHDCREQGHYALNCPWVY--VKEAPSFGLAG 221
>05_03_0201 -
9762563-9762843,9763037-9763919,9763988-9764036,
9806710-9807680
Length = 727
Score = 28.3 bits (60), Expect = 5.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 420 FCHDFQNKGCYRINCKFIH 476
FCHD + +G Y +NC +++
Sbjct: 421 FCHDCREQGHYALNCPWVY 439
>10_05_0023 + 8171023-8171782,8172658-8172950
Length = 350
Score = 27.9 bits (59), Expect = 6.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 420 FCHDFQNKGCYRINCKFIHS 479
FCHD + G Y +NC ++++
Sbjct: 40 FCHDCREPGHYALNCPWVYA 59
>06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/53 (22%), Positives = 23/53 (43%)
Frame = +3
Query: 327 CRDYIRGYCTRDNCRYIHEIPPIAFLKDLFRFCHDFQNKGCYRINCKFIHSSI 485
C +++G C+ +C+ H++ P + C F C I C + H +
Sbjct: 1863 CTKFLKGLCSNTSCKLTHKVLP-----ERMPDCSYFLRGLCTNIACPYRHVKV 1910
>03_05_0811 - 27867228-27867701,27868313-27868497,27869123-27869393
Length = 309
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 138 CLNFIYLCCFHYSGRTCKS 82
CL+ YL C +Y G++C+S
Sbjct: 74 CLDAYYLKCLNYCGQSCRS 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,577,219
Number of Sequences: 37544
Number of extensions: 249055
Number of successful extensions: 508
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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