Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H05
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical ...    58   4e-09
U67957-1|AAB07587.2|  324|Caenorhabditis elegans Hypothetical pr...    39   0.002
U42439-8|AAM98032.1|  431|Caenorhabditis elegans Hypothetical pr...    31   0.84 
Z93374-1|CAB07554.1|  346|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical ...    29   1.9  
AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z69788-2|CAA93645.1|  303|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z73972-10|CAA98263.2|  388|Caenorhabditis elegans Hypothetical p...    28   5.9  
AL021474-8|CAA16310.2|  388|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z73428-1|CAA97807.1|  219|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U32854-1|AAC46919.1|  219|Caenorhabditis elegans unc-119 protein.      27   7.9  

>AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.9 protein.
          Length = 315

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
 Frame = +3

Query: 327 CRDYIRGYCTRDN-CRYIH--EIPPIAFLKDLFRFCHDFQNKGCYRINCKFIHSSIEEED 497
           CRD+++  C R + C++ H  E PPI+     + FC D+QN+GC R NC+F+H+  +E +
Sbjct: 59  CRDFLKNICNRGSRCKFYHPSEAPPIS--DHDYNFCIDYQNRGCQRDNCRFVHAPRDEVE 116

Query: 498 HF 503
            +
Sbjct: 117 RY 118



 Score = 33.5 bits (73), Expect = 0.12
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 321 NYCRDYIRGYCTRDNCRYIH 380
           N+C DY    C RDNCR++H
Sbjct: 90  NFCIDYQNRGCQRDNCRFVH 109


>U67957-1|AAB07587.2|  324|Caenorhabditis elegans Hypothetical
           protein K02H8.1 protein.
          Length = 324

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +3

Query: 327 CRDYIRGYCTRDN--CRYIHEIPPIAFLKDLFRFCHDFQNKGCYRIN--CKFIHSSIEEE 494
           CR+++RG C R +  C++ H  P +   +     C+D     C R N  CK++H     +
Sbjct: 44  CREFLRGQCARSDQECKFAHPPPNVDVQQGRVTACYDSIKGRCTRENPKCKYLHPPQHIK 103

Query: 495 DHFYSSG 515
           D    +G
Sbjct: 104 DQLLING 110


>U42439-8|AAM98032.1|  431|Caenorhabditis elegans Hypothetical
           protein F19C7.8a protein.
          Length = 431

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 420 FCHDFQNKGCYRINCKFIHSSIEEEDHFYSSGVFPRDH 533
           F H + +    R++   IHS+I    H+YS  V+P  H
Sbjct: 66  FTHGYHHNPHARLSQPDIHSAIYRPHHYYSPPVYPGSH 103


>Z93374-1|CAB07554.1|  346|Caenorhabditis elegans Hypothetical
           protein C06C6.2 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/76 (23%), Positives = 35/76 (46%)
 Frame = +1

Query: 331 EITFVVIAREIIADIYMRFHR*HFLKTYFVFVTTFKIRDVTESIVSLYTAALKRKIIFIL 510
           ++ + ++++ +I   +M+        T F  ++T     + E  +S Y A      IFI+
Sbjct: 242 QLFYALVSQAVIPIFFMQIPLSAIYITLFANISTPFFGHLQELTISFYLATDALPTIFII 301

Query: 511 QEYFRVITVTYLCVKL 558
           + Y   I  T  C+KL
Sbjct: 302 KPYREFIFSTLRCLKL 317


>AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6b protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 327 CRDYIRGYCTRDN-CRYIHEIPPIAFLKDLFRFCH-DFQNKGCYRINCKFIHS 479
           CR +  GYC++ N C + H+   +A   +    CH +   K  Y   C+F+H+
Sbjct: 8   CRYFANGYCSKGNTCTFTHD---VATRNE--NICHFNLVGKCSYGRACRFLHT 55


>AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6a protein.
          Length = 413

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 327 CRDYIRGYCTRDN-CRYIHEIPPIAFLKDLFRFCH-DFQNKGCYRINCKFIHS 479
           CR +  GYC++ N C + H+   +A   +    CH +   K  Y   C+F+H+
Sbjct: 8   CRYFANGYCSKGNTCTFTHD---VATRNE--NICHFNLVGKCSYGRACRFLHT 55


>Z69788-2|CAA93645.1|  303|Caenorhabditis elegans Hypothetical
           protein F09A5.3 protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 300 KLTTIAGNYCRDYIRGYCTRDNCRYIHEI 386
           K+T +   Y  +  R YCTR NC +  E+
Sbjct: 23  KMTNLQSRYDDELKRCYCTRRNCNFSCEV 51


>Z73972-10|CAA98263.2|  388|Caenorhabditis elegans Hypothetical
           protein F15H10.4 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 393 SVESHVYICNYLACNNHECN 334
           S+  HV  CNY+ C N  CN
Sbjct: 84  SIYMHVVGCNYVICANSACN 103


>AL021474-8|CAA16310.2|  388|Caenorhabditis elegans Hypothetical
           protein F15H10.4 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 393 SVESHVYICNYLACNNHECN 334
           S+  HV  CNY+ C N  CN
Sbjct: 84  SIYMHVVGCNYVICANSACN 103


>Z73428-1|CAA97807.1|  219|Caenorhabditis elegans Hypothetical
           protein M142.1 protein.
          Length = 219

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = +3

Query: 327 CRDYIRGYC---TRDNCRYIHEIPPIA--FLKDLFRFCHDFQNKGCYRINCKFI 473
           C D+  G+C   +R+NC +I+E P ++   + D+    ++ ++   Y +  K +
Sbjct: 155 CFDFEFGFCMPNSRNNCEHIYEFPQLSQQLMDDMINNPNETRSDSFYFVENKLV 208


>U32854-1|AAC46919.1|  219|Caenorhabditis elegans unc-119 protein.
          Length = 219

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = +3

Query: 327 CRDYIRGYC---TRDNCRYIHEIPPIA--FLKDLFRFCHDFQNKGCYRINCKFI 473
           C D+  G+C   +R+NC +I+E P ++   + D+    ++ ++   Y +  K +
Sbjct: 155 CFDFEFGFCMPNSRNNCEHIYEFPQLSQQLMDDMINNPNETRSDSFYFVENKLV 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,930,395
Number of Sequences: 27780
Number of extensions: 263577
Number of successful extensions: 561
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)