Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_H04
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0030 + 9089087-9089207,9090406-9090533,9090897-9090954,909... 78 5e-15
07_01_0641 - 4790704-4790720,4790824-4791296,4791707-4792023,479... 32 0.40
07_03_1263 + 25279899-25279985,25280263-25282372,25282700-252827... 29 2.8
07_01_0383 - 2856777-2858042,2858238-2858270,2858607-2858742,286... 28 5.0
01_06_0440 + 29401405-29401407,29401721-29401920,29402406-294024... 28 5.0
02_05_1167 - 34638709-34639104,34640653-34642158 28 6.5
08_01_0440 + 3875422-3875619,3875710-3876382,3876449-3877943,387... 27 8.7
05_03_0515 + 14930736-14932697 27 8.7
>11_03_0030 +
9089087-9089207,9090406-9090533,9090897-9090954,
9091055-9091096,9091678-9091796,9092187-9092253,
9092616-9092707,9092966-9093025,9093026-9093163,
9093242-9093346,9093450-9093533,9093699-9093823,
9094160-9094202
Length = 393
Score = 78.2 bits (184), Expect = 5e-15
Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
Frame = +2
Query: 227 PDLSQFKFKKKPHITIEYDDHTPTEKEGKGIWEPPNWRAFFLNLQIMRSNNDAPVDSMGC 406
PD+ F++ K + + K + P NW A ++ MR + +APVD+ GC
Sbjct: 88 PDIEDFRYGKASPSLVRLEKKVRVSSAIK-VGAPENWEAILKGIKNMRLSGEAPVDTKGC 146
Query: 407 HMSMDENAPPQVYRYQSLISLMLSSQTKDQVTFAAMERLRARG-LTIDNILQMSDEELGQ 583
+ PP+ R+ LIS M+SSQTKD+VT AA+ERL +G L D I++ + L
Sbjct: 147 EKA-GSLLPPKERRFAVLISTMMSSQTKDEVTHAAVERLSEKGLLDPDAIVRTDEATLAN 205
Query: 584 LIYP 595
LI P
Sbjct: 206 LIKP 209
>07_01_0641 -
4790704-4790720,4790824-4791296,4791707-4792023,
4792094-4792423
Length = 378
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 380 HCLISLSVD*EKRHASWVVPRYLYLPFLWEYD 285
H L +L+ D ++R WV+ Y Y PF + YD
Sbjct: 286 HILPNLNYDEQQRDGPWVLQHYNYRPFNFNYD 317
>07_03_1263 +
25279899-25279985,25280263-25282372,25282700-25282793,
25283178-25283314,25283419-25283454,25283602-25283642,
25284036-25284125,25284229-25284284,25284947-25285030,
25285072-25285150
Length = 937
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 407 HMSMDENAPPQVYRYQSLISLMLSSQTKDQVTFAAMERLRARGLTIDNILQMS 565
H +DE P ++ Y SLI+ + ++T ++ + GLT D I+ S
Sbjct: 587 HKMLDEGTMPNIFTYTSLINGLCHDDRLPEMT-PLLKNMILEGLTPDRIMYTS 638
>07_01_0383 -
2856777-2858042,2858238-2858270,2858607-2858742,
2860778-2860890
Length = 515
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -3
Query: 322 PDTFTFLFCGSMIIILNCDVRLLLKFELTQIRTSFSWTRLIFFR 191
P T L CG ++ ++C + L+LK+++ + R + TR++ R
Sbjct: 264 PSDGTLLVCGGLVSDMDCPLHLVLKYDVYKNRWTV-MTRMLAAR 306
>01_06_0440 +
29401405-29401407,29401721-29401920,29402406-29402490,
29403038-29403121,29403853-29404147,29404228-29404322,
29406118-29406858
Length = 500
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 119 IQRMLRTTNTSLQKNDKSPLKAPSPEKDESSPRKGGPDLSQF 244
I R R T + K ++ K+PSP+KD + P K +L F
Sbjct: 125 IDRSYRITESYAAKVSQAN-KSPSPKKDPAKPLKASQNLGSF 165
>02_05_1167 - 34638709-34639104,34640653-34642158
Length = 633
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 158 KNDKSPLKAPSPEKDESSPRKGGPDLSQFKFKKKPHITIEYDDHTPTEKEG--KGIWEPP 331
KND+ P KA KDES G + + K KKK + + H K+G +W P
Sbjct: 402 KNDEKPSKANQGSKDESGDLGKGKEKNSSK-KKKGASSGDSTKHESEYKKGLRPVLWLTP 460
Query: 332 NW 337
++
Sbjct: 461 DF 462
>08_01_0440 +
3875422-3875619,3875710-3876382,3876449-3877943,
3878029-3878280,3878361-3878471,3878561-3878642,
3878917-3879108
Length = 1000
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 188 SPEKDESSPRKGGPDLSQFKFKKKPHITIEYDDHTPTEKEGKGIWEPPNWRAFFLN 355
+PE+ E+S GG + + K +T E + +++GK I EPP R+ F N
Sbjct: 94 APERTETSTSAGGSGKKRRGERSKNKLTKETYNVIALDQDGKPI-EPPIVRSKFSN 148
>05_03_0515 + 14930736-14932697
Length = 653
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 501 LLQLWKDYELEVLPLTIF 554
L+QLW D+EL+VL L F
Sbjct: 4 LIQLWNDWELQVLVLLSF 21
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,387,058
Number of Sequences: 37544
Number of extensions: 317598
Number of successful extensions: 862
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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