Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H04
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.43 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.3  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   7.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 140 TNTSLQKNDKSPLKAPSPEKDESSPRKGGP 229
           T  S Q +  +P   PSP +   +P++G P
Sbjct: 10  TQQSQQPSSGAPGPQPSPHQSPQAPQRGSP 39



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 362 IMRSNNDAPVDSMGCHMSMDENAPPQVYRYQS 457
           I R   DAP D  G    +DE   P+ + + S
Sbjct: 679 IKRELVDAPADQEGDDDQVDEREYPESHGHDS 710


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 192 LKKMSLVQEKEVLI*VNSNLRRSLTSQLSMMIILPQKRKVKVSGN 326
           LK+    + KEV I    + R+     LS    + +KR+V +  N
Sbjct: 76  LKRQLCEKRKEVSIITEDSSRKQTIDPLSSNTQITRKRRVGIVEN 120


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
          isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/12 (50%), Positives = 12/12 (100%)
 Frame = -3

Query: 97 LPNVYLSFSKNI 62
          +P++YL+++KNI
Sbjct: 42 VPSIYLTYAKNI 53


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 575 TLHHSFVKYCQW*DL*LVV 519
           T HH+F+K C   D+ + +
Sbjct: 126 TKHHNFIKVCSVNDVNMTI 144


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 61  IYFLKKKDKHSEAT 102
           +YF+ K DK+ E T
Sbjct: 82  LYFINKNDKYEENT 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,323
Number of Sequences: 438
Number of extensions: 3576
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)