Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H03
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    27   2.2  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    27   2.9  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    25   6.6  

>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 506 NIPIWRFKSSRIYTNFAPILAAAKPISPLPFKSKTIASFGKT 381
           N+ +W ++SSR    F    AA K I   P +   +AS G T
Sbjct: 272 NLFVWDYRSSRPLHKFEEHTAAVKAIGWSPHQRGILASGGGT 313


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 139 HWMQAVYYLPQEVTVHKGN-VASLISCQ 219
           HW Q V+Y  +++TV  G  +   I+C+
Sbjct: 277 HWKQTVFYTHKDLTVKAGEYIRGTITCK 304


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = -2

Query: 617 LEKLVSHITLVTSLNMSSLNSGTIVTLLKPFSFI*SFNIPIWRFKSSRIYTNFAPILAAA 438
           ++K+   +T V+  N S+   G+ +T+    +    +NI I  F +     ++     AA
Sbjct: 220 IDKMYDLLTEVSKTNPSTGYKGSYLTVTNRDAVFVGWNIVIGGFATVFCDPSYGQKAIAA 279

Query: 437 KPISPL 420
           KPIS +
Sbjct: 280 KPISAM 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,880
Number of Sequences: 5004
Number of extensions: 62020
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)