Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H03
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0038 + 375893-376093,376758-376883,376978-377177,377411-37...    42   4e-04
04_04_1057 - 30451759-30452523,30452627-30452701,30453180-304532...    29   2.2  
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572...    29   3.0  
08_01_0874 + 8575718-8576422,8576603-8576662,8576799-8576945,857...    28   6.8  
11_03_0120 - 10255303-10255518,10256490-10256582,10256774-102568...    27   9.0  

>06_01_0038 +
           375893-376093,376758-376883,376978-377177,377411-377502,
           377966-378222,378610-378846,378986-379063,380422-380571,
           380646-380720,381109-381205,381289-381341
          Length = 521

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = +1

Query: 22  WELNMDPEGKIPLSCAPWWCHPDTNISSERPQ-DTIPWRDHWMQAVYYLP-QEVTVHKGN 195
           W L +D  G I  S AP W       SSE PQ D   W DHW Q V+++  + +   +  
Sbjct: 177 WVLQLDSAGSIFYSTAPRWARQS---SSEGPQRDMKDWCDHWKQCVWFMQGKGIPATEDQ 233

Query: 196 VASLISCQDEYSLWFYL 246
           V SL +  ++ S+ + L
Sbjct: 234 VLSLRARHNQTSISYQL 250


>04_04_1057 -
           30451759-30452523,30452627-30452701,30453180-30453254,
           30453503-30453591,30454058-30454157,30454244-30454388,
           30454609-30454658,30455033-30455114,30455200-30455282,
           30455360-30455429,30455523-30455632,30455719-30455872,
           30456639-30456796,30457338-30457517
          Length = 711

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 75  PWGTTKRNFTFRVHIKLPPHEYPS 4
           P G T  +++ R  + +PPHEYPS
Sbjct: 593 PLGKTPSSYSKRRGLPMPPHEYPS 616


>04_04_0201 -
           23555336-23556008,23556097-23556258,23556353-23557206,
           23557452-23557613,23558197-23558649,23559729-23559788,
           23559983-23560058,23561546-23561593,23561948-23562022,
           23562067-23562494
          Length = 996

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 199 ASLISCQDEYSLWFYLEKQIRHDNYKRPICECGVHMALSRTHVSYVNDGRRSKRFLGHLN 378
           A+    +D YS   Y +KQ++H  Y R   +C        TH S     +  +   GH+ 
Sbjct: 515 AAAAVAEDGYSWRKYGQKQVKHSEYPRSYYKC--------THASCAVKKKVERSHEGHVT 566

Query: 379 EVLPK 393
           E++ K
Sbjct: 567 EIIYK 571


>08_01_0874 +
           8575718-8576422,8576603-8576662,8576799-8576945,
           8577390-8577527
          Length = 349

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 97  ISSERPQDTIPWRDHWMQAVYYLPQEVTVHKGNVASLISCQDEY 228
           +S+  P+D +    + ++ ++Y+P   T H+      I CQ+EY
Sbjct: 267 VSTGLPEDEL---SNCLKRIHYVPSASTSHEDGDIKCIICQEEY 307


>11_03_0120 -
           10255303-10255518,10256490-10256582,10256774-10256872,
           10258145-10258264,10258345-10258467,10259933-10260046,
           10261173-10261361,10263100-10263266,10263829-10263913,
           10264176-10264370,10266251-10266436,10266575-10266614,
           10267899-10267966
          Length = 564

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
 Frame = +1

Query: 88  DTNISSERPQDTIPWRDHWMQAV-------YYLPQEVTVHKGNVASLISCQDEYSLWFYL 246
           D  +SS   + T PW + W+  +        Y P  V+  +G +   +  + E   W + 
Sbjct: 477 DGTLSSAESKRTTPWVEDWVNPIPPTPNPAAYNPAFVSGSEGGITFTVPLEMETMWWCFT 536

Query: 247 EKQIRHDNYKRPICECGVHM 306
              +  D  +  I  C V M
Sbjct: 537 TDHVSSDVPRVTIITCQVIM 556


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,784,364
Number of Sequences: 37544
Number of extensions: 390908
Number of successful extensions: 879
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)