Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H03
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034364-2|CAA22252.1|  630|Caenorhabditis elegans Hypothetical ...    31   0.66 
U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic glut...    30   1.2  
L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate recep...    30   1.2  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    29   2.0  
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical p...    29   2.7  
DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagella...    29   2.7  
Z93390-3|CAB07676.1|  680|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z68493-6|CAA92792.1|  335|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical...    28   6.1  

>AL034364-2|CAA22252.1|  630|Caenorhabditis elegans Hypothetical
           protein W06D4.4 protein.
          Length = 630

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 25/92 (27%), Positives = 39/92 (42%)
 Frame = +1

Query: 277 RPICECGVHMALSRTHVSYVNDGRRSKRFLGHLNEVLPKDAIVLDLNGSXXXXXXXXXXX 456
           R  C CG+H  LSR  V +VN+   +++F   +++ L K   V  + G            
Sbjct: 325 RSYCVCGLHSMLSRQTVYHVNEMFENQKFKDEVDK-LSKGLHVATV-GEGSFLGLLAAKT 382

Query: 457 XXXVYILEDLNLHIGILNDYIKENGLSNVTIV 552
              V I++       I   YI    L+NV I+
Sbjct: 383 AKRVTIIDGNERFRDIFFKYIHYYKLTNVEII 414



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 10  VFMWWELNMDPEGKIPLSCAPWW 78
           + MWW+++MD  G   +   P W
Sbjct: 267 LLMWWDIDMDRNGTTFIDMGPKW 289


>U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic
           glutamate receptor subunitprotein.
          Length = 962

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +2

Query: 227 TPFGSIWRSK*DMIIT----NDPSANVESIWLYQGLMCHTSMTVDGARGSSVIS 376
           TPFGS W+   ++ I           +E+ W Y    C   +TVDG+  S  +S
Sbjct: 801 TPFGSDWKDHINLAILALQERGELKKLENKWWYDRGQCDAGITVDGSSASLNLS 854


>L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 1 protein.
          Length = 962

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +2

Query: 227 TPFGSIWRSK*DMIIT----NDPSANVESIWLYQGLMCHTSMTVDGARGSSVIS 376
           TPFGS W+   ++ I           +E+ W Y    C   +TVDG+  S  +S
Sbjct: 801 TPFGSDWKDHINLAILALQERGELKKLENKWWYDRGQCDAGITVDGSSASLNLS 854


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -1

Query: 162  IVDSLHPMIAPRYS---VLWAFRGYICVRMTPPWGTTKRNFTFRVHIKLPPHEY 10
            +V+S HP      S   +L+    YICVR +P   T + +    +++K+  H Y
Sbjct: 1766 VVESQHPYKPNTSSSMVLLFEEADYICVRFSPDCQTAQFDDQLTIYLKIDEHSY 1819


>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
            protein F07B7.12 protein.
          Length = 1900

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -1

Query: 162  IVDSLHPMIAPRYS---VLWAFRGYICVRMTPPWGTTKRNFTFRVHIKLPPHEY 10
            +V+S HP      S   +L+    YICVR +P   T + +    +++K+  H Y
Sbjct: 1702 VVESQHPYKPNTSSSMVLLFEEADYICVRFSPDCQTAQFDDQLTIYLKIDEHSY 1755


>Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical
           protein F23B2.4 protein.
          Length = 1192

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 121 TIPWRDHWMQAVYYLPQEVTVHKGNVASLISCQDEYSLWFYLEKQIRHDNY 273
           T+   DHW+ +V   P   TV  G V   I+C   Y+L F     + H  Y
Sbjct: 274 TVAQMDHWIWSVTVRPNSQTVAMGCVDGTIAC---YNLVFSTVHCVDHARY 321


>DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagellar
           transport protein protein.
          Length = 1192

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 121 TIPWRDHWMQAVYYLPQEVTVHKGNVASLISCQDEYSLWFYLEKQIRHDNY 273
           T+   DHW+ +V   P   TV  G V   I+C   Y+L F     + H  Y
Sbjct: 274 TVAQMDHWIWSVTVRPNSQTVAMGCVDGTIAC---YNLVFSTVHCVDHARY 321


>Z93390-3|CAB07676.1|  680|Caenorhabditis elegans Hypothetical
           protein T23B5.1a protein.
          Length = 680

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +1

Query: 322 HVSYVNDGRRSKRFLGHLNEVL-PKDAIVLDLNGSXXXXXXXXXXXXXXVYILEDLNLHI 498
           H+  +ND +R++ F   LN+ +  +  +V D+                 V  LE+     
Sbjct: 142 HIRMINDVKRNEAFAKALNDTIKSRITVVFDIGSGTGILSAIAARKTNLVTALEENMCLT 201

Query: 499 GILNDYIKENGLSN 540
            I  + +K NG+ +
Sbjct: 202 MISKEVLKRNGVES 215


>Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical
           protein C33A12.13 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 98  YPLNAHKTLYRGAIIGCKLSTIYL 169
           YP  A  T Y GAI G + ST YL
Sbjct: 189 YPFGAIWTYYSGAIFGFRNSTFYL 212


>Z68493-6|CAA92792.1|  335|Caenorhabditis elegans Hypothetical
           protein C33A12.8 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +2

Query: 20  GGSLIWTLKVKF-LLVVPHGGVI--LTQIYPLNAHKTLYRGAIIGCKLSTIYL 169
           G  LIW   + F   ++P  GV   L+  YPL A    Y  A  G + S +YL
Sbjct: 159 GVPLIWIYPLFFTFFLIPAVGVCRQLSSPYPLGAVHIYYANAAFGMRNSYLYL 211


>AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical
           protein Y113G7B.17 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 139 HWMQAVYYLPQEVTVHKG 192
           HW Q V+YL   +TV KG
Sbjct: 288 HWKQTVFYLKDALTVKKG 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,285,819
Number of Sequences: 27780
Number of extensions: 343507
Number of successful extensions: 727
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)