Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H03
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    25   0.59 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.8  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    23   2.4  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 511 DYIKENGLSNVTIVPEFSDDM 573
           DYI E G   VT+ PEF D +
Sbjct: 51  DYIFEEGDDYVTLPPEFFDSL 71


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 58  LSCAPWWCHPDTNISSERPQDTIPWRDHWM-QAVYYLPQEVTVHKGNVASLISCQDEYSL 234
           +SC+P   HP+T I   R + ++    + + ++V Y    +TV   +  S +  Q +  +
Sbjct: 362 VSCSPQTVHPETIIDVSRRRSSLICDVYGVNESVSYERGSMTVSVTSKPSTMERQTQTEV 421

Query: 235 W 237
           W
Sbjct: 422 W 422


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 6/27 (22%), Positives = 17/27 (62%)
 Frame = -1

Query: 306 HMDSTFADGSFVIIMSYLLLQIEPKGV 226
           H+  T+   + +++MS++   I+P+ +
Sbjct: 216 HLFHTYIPSALIVVMSWIAFWIKPEAI 242


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 156 DSLHPMIAPRYSVLWAFRGYICVRMTPPWGTTK 58
           D  HP+ AP + V+ A    I   +   +GT K
Sbjct: 3   DEDHPIYAPFFGVMGAASAIIFSALGAAYGTAK 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,372
Number of Sequences: 438
Number of extensions: 4320
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)