Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H02
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   3.3  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    25   5.8  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.7  

>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 246 NLKYFYVPSYYLYFTKRSMLILINLVYIHCKTLTI 142
           +L++F+V +Y+ +F K+S    I  + I C  LT+
Sbjct: 5   SLQFFFVDNYF-FFWKQSKYQSIYAIQIRCFFLTV 38


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 267 IYIYLLFNLKYFYVPSYYLYFTKRSMLILINLVYIHCKTLTI 142
           +  Y+ + + Y  VPS    F KRS++ L  L Y +   + I
Sbjct: 167 VVYYVDYGVTYVSVPSIVRPFLKRSLINLGFLYYFYMAAVAI 208


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 243 LKYF-YVPSYYLYFTKRSMLILINLVYIHCKTL 148
           L++F Y+P Y L+F + + L+ I L  ++  TL
Sbjct: 565 LRFFAYLPDYRLFFRRYTNLVDIVLAVLNLVTL 597


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,561,705
Number of Sequences: 5004
Number of extensions: 27732
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)