Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_H01
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 297 5e-81
02_05_1114 + 34218218-34218463,34219143-34219179,34219450-342196... 30 1.7
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 29 2.3
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 29 2.3
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 29 2.3
05_03_0498 - 14720989-14722119,14722225-14722839 28 6.9
03_04_0174 - 18044516-18046327 28 6.9
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922 28 6.9
11_06_0377 - 22900042-22900452,22900527-22902236 27 9.1
02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949 27 9.1
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 297 bits (729), Expect = 5e-81
Identities = 134/198 (67%), Positives = 164/198 (82%)
Frame = +2
Query: 29 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 208
MGRVIRAQRKGAGSVF SHT RKG + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60
Query: 209 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 388
V FR P+++K +KELF+A EG+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E +
Sbjct: 61 VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHV 120
Query: 389 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 568
GDRG ARASG++A VI HNPD +R+KLPSGAKK++PSS R M+G VAGGGR +KP+L
Sbjct: 121 GDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPML 180
Query: 569 KAGRAYHKNLTK*KRNCW 622
KAG AYHK + KRNCW
Sbjct: 181 KAGNAYHK--YRVKRNCW 196
>02_05_1114 +
34218218-34218463,34219143-34219179,34219450-34219633,
34219725-34219873,34220271-34220504,34220592-34220781,
34220863-34220988,34221386-34221485,34221598-34221957
Length = 541
Score = 29.9 bits (64), Expect = 1.7
Identities = 24/69 (34%), Positives = 30/69 (43%)
Frame = -1
Query: 562 GLVNTTTTRDNTNHASVA*W*HFFGTRWKLYSRTFGVRIVTYNCGKIARGASQSSSITHL 383
GL+NTTT N ++ S W GT K+ S TF T A A S IT L
Sbjct: 374 GLLNTTTFEPNPDYYSALLWNRLMGT--KVLSATFN---GTNKIRAYAHCARDSRGITLL 428
Query: 382 FFQITHNCT 356
++ N T
Sbjct: 429 LINLSGNNT 437
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 451 GRQTYASKASIWCQKSVTIKQQRHGWYCRGWWSY*QAH 564
G++ S CQKS + K++ GW+C W Q H
Sbjct: 895 GQENPDSLTDYGCQKSGSTKKKVAGWWCGKVWMSNQVH 932
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 479 EALLAYVWRPDCDL*LWQNCQRREPVVLDHPSFLPNYTQL 360
E L V+ PD + W+ C RR ++ S +P +QL
Sbjct: 431 EGHLRIVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQL 470
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 479 EALLAYVWRPDCDL*LWQNCQRREPVVLDHPSFLPNYTQL 360
E L V+ PD + W+ C RR ++ S +P +QL
Sbjct: 441 EGHLRIVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQL 480
>05_03_0498 - 14720989-14722119,14722225-14722839
Length = 581
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 602 LLNFCDKHAQPSRWAC 555
LL+FCD+H +P+R C
Sbjct: 294 LLDFCDRHGKPARGHC 309
>03_04_0174 - 18044516-18046327
Length = 603
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 421 ARGASQSSSITHLFFQITHNCTFRHSTHRHYIAN 320
+RG++ S S H THN T+ H +H HY N
Sbjct: 35 SRGSTSSPSSHH-----THNHTYYHHSHSHYNNN 63
>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
Length = 147
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 446 NPDAKRTRVKLPS--GAKKVLPSSNRGMVGIVAGGGRIDKPI 565
+P + RTR PS GA K ++ +G+ GG R+ PI
Sbjct: 45 SPTSTRTRTSTPSAPGAAKAASPNHVRAIGVREGGARLVGPI 86
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 308 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRL-ARASGNFATVIGHNPDAKRTRVK 475
A L+ G P+G + E VC L + D R+ A +G + G PD + RV+
Sbjct: 373 AALDDGEERPLGGLVEELFVCRLGD--DDEVRVGANHNGEGRRLRGPRPDGEEARVR 427
>02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949
Length = 705
Score = 27.5 bits (58), Expect = 9.1
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +2
Query: 329 VMPVGAMPEG---TIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 499
V+PV +G + E RGR ARAS G N +KR R+ +P+ + +
Sbjct: 469 VVPVTHFQQGWNAPVAIGGEHLYNQRGREARASDAIVINGGDNNLSKRKRLTVPARSNSL 528
Query: 500 LPSSNRGMVGIVAGGGRIDKPI 565
+N I +G R+ PI
Sbjct: 529 --KNNMASNSIKSGSQRMWVPI 548
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,210,474
Number of Sequences: 37544
Number of extensions: 452206
Number of successful extensions: 1242
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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