Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H01
         (622 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein ...   351   8e-99
AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.         27   0.36 
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    26   0.84 
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    25   2.6  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    25   2.6  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    23   7.8  

>AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein L8
           protein.
          Length = 261

 Score =  351 bits (864), Expect = 8e-99
 Identities = 162/198 (81%), Positives = 179/198 (90%)
 Frame = +2

Query: 29  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 208
           MGRVIRAQRKGAGSVF +HTKKRKG PKLR LDYAERHGY+KGVVK II DPGRGAPLAV
Sbjct: 1   MGRVIRAQRKGAGSVFRAHTKKRKGQPKLRHLDYAERHGYLKGVVKQIIQDPGRGAPLAV 60

Query: 209 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 388
           V+FRDPY+F+  K+LFIA EG+YTGQFVYCG++A L++GNV+P+G MPEGTIVCNLEEK 
Sbjct: 61  VNFRDPYRFRLSKQLFIAAEGMYTGQFVYCGRRAQLQIGNVIPIGLMPEGTIVCNLEEKT 120

Query: 389 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 568
           GDRG+LAR SGN+A+VI HNPD KRTRVKLPSGAKKVLPS+NR MVGIVAGGGRIDKPIL
Sbjct: 121 GDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPIL 180

Query: 569 KAGRAYHKNLTK*KRNCW 622
           KAGRAYHK   K KRNCW
Sbjct: 181 KAGRAYHK--YKVKRNCW 196


>AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.
          Length = 144

 Score = 27.5 bits (58), Expect = 0.36
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 506 SSNRGMVGIVAGGGRIDKPILKAGRAYHK 592
           S+ +  +G V GG   D  IL  GRAYH+
Sbjct: 81  SAGQVPLGAVVGGHTSDGEILYVGRAYHE 109


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 26.2 bits (55), Expect = 0.84
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 295 LWQESNSRSWQCNACGCY 348
           LW+ +N     CNACG Y
Sbjct: 187 LWRRNNDGEPVCNACGLY 204



 Score = 25.8 bits (54), Expect = 1.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 295 LWQESNSRSWQCNACGCY 348
           LW+   +  + CNACG Y
Sbjct: 130 LWRRDGTGHYLCNACGLY 147


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 137 RHGYIKGVVKDIIHDP 184
           R+  +K ++KDI+HDP
Sbjct: 737 RYTMLKDMIKDIMHDP 752


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 137 RHGYIKGVVKDIIHDP 184
           R+  +K ++KDI+HDP
Sbjct: 737 RYTMLKDMIKDIMHDP 752


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 558 LSIRPPPATIPTM 520
           + +RPPP  +PTM
Sbjct: 114 MGMRPPPMMVPTM 126


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 740,769
Number of Sequences: 2352
Number of extensions: 18364
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60214320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)