Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G24
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.5  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   6.1  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   8.0  

>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 276 KSHEARNGGGGSDKNQKTSLYRGCSDISFARVFFVYIKCATP 401
           K  +  + G GS K +K  +   C D+     FF+ I  A P
Sbjct: 255 KRLDTDHAGLGSKKFKKYQILEACRDVRMYLYFFLQIAVAIP 296


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -2

Query: 357 RYHCTLYIEMFSDFCPNPLHHFEPRVIYM 271
           +Y C+ +  ++SDF  N  +++ PR+ Y+
Sbjct: 832 KYMCS-FTFIYSDFTSNITNNYRPRIYYL 859


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = -1

Query: 370 TRANEISLHPLYRDVF*FLSEPPPPFRASCDLYGRSPMFKIKQNISVKYIMLTNAKKF 197
           +R   ++ HP YR +  F +     F   C+L G +      +N+ V + +    KKF
Sbjct: 495 SRRTGLTKHPYYRYISGFGAALNIYFMIICNLIGFAVGIDGIKNVLVSFFLTLKGKKF 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,495
Number of Sequences: 5004
Number of extensions: 44595
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)