Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G24
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606...    28   6.2  
12_02_0780 + 23094989-23095380,23096132-23096573,23096687-230973...    27   8.2  

>02_02_0009 +
           6068260-6068591,6068797-6068917,6069034-6069122,
           6069207-6069291,6069421-6069580,6069667-6069743,
           6069848-6069898,6069979-6070069,6070167-6070468,
           6070549-6070830,6070911-6071388,6071457-6071560,
           6071647-6071809,6071895-6072017,6072099-6072217,
           6072304-6072636,6072713-6073003,6073088-6073171,
           6073260-6073393,6073478-6073705,6073795-6073966,
           6074062-6074316,6074408-6074668
          Length = 1444

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 484 NIDFFYNKYIVIILIITRDGGVFKRLLKISRD 579
           NI+ F+  Y++++LI     G+F+ L  + R+
Sbjct: 633 NIERFFRHYVLLVLISQMASGLFRLLAALGRE 664


>12_02_0780 +
           23094989-23095380,23096132-23096573,23096687-23097311,
           23098240-23098280,23098371-23098439,23098779-23098879,
           23099422-23099500,23099946-23100044,23100123-23100191,
           23100283-23100332,23100416-23100497,23100997-23101091,
           23101263-23101395
          Length = 758

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = -2

Query: 471 NLIEFYDIFTQQQRDKPIHRFLVQVSRI*CKQKIHVRMRYHCTLYIEMFSDFCPNPLHHF 292
           N++ F    T  QR   +  FL + S     Q+ + ++ +   +++ +      N LHHF
Sbjct: 534 NILLFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNNTKLDWRRRVHMALDIARGMNYLHHF 593

Query: 291 EPRVIYMD 268
            P +I+ D
Sbjct: 594 SPLIIHRD 601


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,657,150
Number of Sequences: 37544
Number of extensions: 267273
Number of successful extensions: 663
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)