Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G24
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF077544-2|AAK39243.2|  644|Caenorhabditis elegans Hypothetical ...    28   5.5  

>Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical
           protein R05H5.6 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 516 YNVFVIKKINIVFNYNLIEFYDIFTQQQRDKPIHRFLVQ 400
           Y++  I  +N+VFNY L++   I  ++ R+    R+ ++
Sbjct: 186 YSLLAINSVNLVFNYFLVKINTILKEKWRNSLSTRYQME 224


>AF077544-2|AAK39243.2|  644|Caenorhabditis elegans Hypothetical
           protein H22K11.2 protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 249 ILNIGERPYKSHEARNGG--GGSDKNQKTSLYRGCSDISF 362
           IL IG RPY S E  NGG      +N K   YR  SD SF
Sbjct: 114 ILRIGNRPYISAEWDNGGLPWWLIRNTKIGKYRS-SDPSF 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,408,393
Number of Sequences: 27780
Number of extensions: 247756
Number of successful extensions: 476
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)