Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_G23
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 194 1e-50
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 49 4e-07
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.1
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 26 4.5
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 25 7.9
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 7.9
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 7.9
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 25 7.9
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c... 25 7.9
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 194 bits (472), Expect = 1e-50
Identities = 91/164 (55%), Positives = 120/164 (73%)
Frame = +2
Query: 83 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 262
K+ YF K+ L ++Y F+V DNV SQQM +R LRG + ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 263 ETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 442
P LE+LLP ++GNVGFVFT DL +VR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68 NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127
Query: 443 LGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEAT 574
+ P KTSFFQAL IPTKI++GTIEI +DVH++ KVG SEAT
Sbjct: 128 MEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEAT 171
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 49.2 bits (112), Expect = 4e-07
Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 3/129 (2%)
Frame = +2
Query: 53 KMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNT 232
K G E KA F + Q LD + +I N+ + +++IR +G S + MGK
Sbjct: 17 KKGHEGKAA----LFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWKG-SRIFMGKTK 71
Query: 233 MMRKAIKDHLETNPA--LEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP-ARPGAI 403
+M KA+ E A + KL + G VG +FT +V E+ VQ AR GA+
Sbjct: 72 VMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAV 130
Query: 404 APLSVVIPA 430
AP + VIPA
Sbjct: 131 APFTHVIPA 139
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 519 IISIVPFEILVGMERAWKKEVFSGPRPVL*AGMTTDNGAMAP 394
IIS P + L+G+ AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 35 PYFTQSKMGREDKATWKSNY 94
PYF Q+ M D A+W SN+
Sbjct: 318 PYFQQALMINVDLASWASNF 337
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 7.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 453 SGPRPVL*AGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRV 325
+G PV + + G++ P AGAW L N L T ++
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKM 180
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 209 IVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLV 343
I L+G N ++ DH++ +P ++ P+I V ++GDLV
Sbjct: 401 IPLLGMNKVILAG--DHMQLSPNVQSKRPYISMFERLVKSQGDLV 443
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 7.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 203 HSIVLMGKNTMMRKAIKDHLE 265
HS++ KNT KA+ HLE
Sbjct: 408 HSLLQKSKNTSSTKALTSHLE 428
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 229 HHDEESHQGPS*NKSSSRKTASSHQG 306
HH+ + S S+SRK A SH G
Sbjct: 431 HHNNDKRAHVSRRHSTSRKIAQSHTG 456
>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 115
Score = 25.0 bits (52), Expect = 7.9
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +2
Query: 8 GLVLKFLRSPYFTQSKM---GREDKATWKSNYFVKI 106
G + F FT+ K GR KAT K NY VK+
Sbjct: 49 GCLFWFSNGALFTEGKARDRGRWAKATMKKNYGVKL 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,732
Number of Sequences: 5004
Number of extensions: 55592
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -