Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_G22
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 108 5e-25
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 31 0.090
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 29 0.36
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 29 0.63
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 28 0.84
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot... 28 1.1
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 27 1.9
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 4.5
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 7.8
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 7.8
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 108 bits (260), Expect = 5e-25
Identities = 58/130 (44%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
Frame = +2
Query: 32 FARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKFRL 211
F RYVE GRV LV+ G GKL +VDI+D RALID P S RQ IR + LT +
Sbjct: 4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVM 63
Query: 212 KYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFK-LTSARVKRNR 388
K P A + +V K W + KWA S WA+KL K+ R+Q+ D+DRF + + +R +
Sbjct: 64 KLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQ 123
Query: 389 ARTAVFKSLK 418
AV K+LK
Sbjct: 124 VNVAVAKALK 133
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 31.5 bits (68), Expect = 0.090
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 190 ELVEANLLPRNTTAGTVNKCACLINDINYANQL 92
E+ E+ LLP + T GTV AC I D + A +L
Sbjct: 951 EMKESGLLPTSVTYGTVINAACRIGDESLAEKL 983
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 29.5 bits (63), Expect = 0.36
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 38 RYVEPGRVALVSDGPLKGKLVGVVDIIDQ 124
+ ++PG+VAL++ G GK V ++ IDQ
Sbjct: 3 KILKPGKVALITRGRFAGKKVVILQAIDQ 31
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 28.7 bits (61), Expect = 0.63
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 38 RYVEPGRVALVSDGPLKGKLVGVVDIIDQ 124
+ ++PG+VALV+ G GK V ++ +DQ
Sbjct: 3 KILKPGKVALVTRGRFAGKKVVILQNVDQ 31
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 28.3 bits (60), Expect = 0.84
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 456 KSPKAQLKSYARRNP-TAKNQQRSNSFVPESSVK 554
K+ KAQL+S A++NP A Q S SF P ++
Sbjct: 446 KARKAQLQSMAQKNPLAASGLQSSLSFTPIQGIE 479
>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 283
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 156 PLPGPSISARV*SMISTTPTNFPFRGPSETRATRPGST*RAKGMTSSQEP 7
P+ G SI + S +P N PSET+ P R K +T Q+P
Sbjct: 18 PVWGKSIYGPLRRRFSFSPINVINHSPSETKRRDPVEELRYKPLTPPQDP 67
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 362 TSARVKRNRARTAVFKSLKVKAARAGVFGKSKIPKSA 472
T +NR T+ F + A AG+FG+S P +
Sbjct: 160 TGGLFDQNRPNTSTFGQFSTQPASAGLFGQSTQPSGS 196
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +2
Query: 17 EDVMPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALID 142
+D F +Y+ G++ L +D P K +G + ++ D
Sbjct: 15 DDKFEFKKYINEGKLPLKADNPKKKPQLGTIQANQPIPSIFD 56
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.0 bits (52), Expect = 7.8
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +2
Query: 248 KAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKA 427
+A + + E+ +++ +KLA +EKR + + K R+++ RA+ A K + ++
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA--KQMSRES 765
Query: 428 ARA 436
A A
Sbjct: 766 AHA 768
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.0 bits (52), Expect = 7.8
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +2
Query: 56 RVALVSDGPLKGKLVGVVDIIDQTRALIDGPGS-----GVSRQQIRLNQLHLTKF 205
++ + SDG + K +G++DI+ Q L D + G Q++ + + H+ +F
Sbjct: 182 QLPVYSDGLQERKFLGILDILQQKMILWDTSDNKLGTDGTHVQELPIPESHMERF 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,599
Number of Sequences: 5004
Number of extensions: 40323
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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