Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G20
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    55   5e-09
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    52   3e-08
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    50   2e-07
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    47   1e-06
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    31   0.099
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    30   0.17 
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    29   0.23 
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   1.2  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    27   1.2  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    26   2.8  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    24   8.6  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    24   8.6  

>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 54.8 bits (126), Expect = 5e-09
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
 Frame = +1

Query: 250 EEFSVEKVLDRRIK--NGKVEYLLKWKGYSN-EDNTW-EPEDNLDCPELISAYEEAR 408
           EEF+VE +LD R+K      +Y LKW+GY +  DNTW + ED   C ELI AY E+R
Sbjct: 174 EEFAVEMILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELIDAYWESR 230


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 52.4 bits (120), Expect = 3e-08
 Identities = 28/53 (52%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
 Frame = +1

Query: 250 EEFSVEKVLDRRI--KNGKVEYLLKWKGYSN-EDNTWEPE-DNLDCPELISAY 396
           +E+ VEKVL  R+  K G  EYLLKW+GY +  DNTW  E D   C +LI AY
Sbjct: 79  DEYVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIEAY 131


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 49.6 bits (113), Expect = 2e-07
 Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +1

Query: 256 FSVEKVL-DRRIKNGKVEYLLKWKGYSNEDNTWEPEDNL 369
           + VE +L DR  KNG  EY +KW GY   DNTWEPE NL
Sbjct: 22  YEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 60


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 19/56 (33%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
 Frame = +1

Query: 250 EEFSVEKVLDRRI-KNGKVE-YLLKWKGYSNEDNTWEPEDNLD-CPELISAYEEAR 408
           EE+ VE+++D ++ +NG V+ Y ++W  YS+  +TWEP +NL  C  +++ ++  +
Sbjct: 6   EEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRRK 61


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 30.7 bits (66), Expect = 0.099
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
 Frame = +1

Query: 247 PEEF-SVEKVLDRRIKNGK--------VEYLLKWKGYSNEDNTWEPEDNL 369
           PE+  +++ VLD R+  G          E+L+KW  +S+   TWEP +N+
Sbjct: 187 PEDTRAIDVVLDHRLIEGHDGSTPSEDYEFLIKWVNFSHLHCTWEPYNNI 236



 Score = 29.9 bits (64), Expect = 0.17
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +1

Query: 250 EEFS-VEKVLDRRIKN-GKVEYLLKWKGYSNEDNTWE 354
           EE+  V++++ + + + G VEYL+KWK    +  TWE
Sbjct: 285 EEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTWE 321


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 29.9 bits (64), Expect = 0.17
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 250 EEFS-VEKVLDRRI-KNGKVEYLLKWKGYSNEDNTWEPED 363
           EE+  VE+++     + GK EY +KW+    ++ TWE  D
Sbjct: 301 EEYKIVERIVASETNEEGKTEYFVKWRQLPYDNCTWEDAD 340



 Score = 27.5 bits (58), Expect = 0.92
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 304 EYLLKWKGYSNEDNTWEPEDNL 369
           +YL+KW+  S+  NTWE    L
Sbjct: 231 QYLIKWQEVSHLHNTWEDYSTL 252


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 268 KVLDRRIKNGKVEYLLKWKGYSNEDNTWEPEDNL 369
           K++D  +K     YL+ +KG+ N  + W  +D +
Sbjct: 23  KIVDTEMKGDVTTYLIHYKGWKNSWDEWVEQDRI 56


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 5   EGQTGSENCLFLICIIVGIWLPL*KIFLKYXRWTKQWSRSHNQIYHIHK 151
           EG+ GS   + LIC ++ + L   + FL Y  +T   S   + + H+ K
Sbjct: 248 EGELGSVFLISLICSVLVLCLLGYEFFLVYAGYTTNESEKWSDLAHLVK 296


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 250 EEFSVEKVLDRRIKNGKVEYLLKWKGYSNEDNTWEPEDNL---DCPELISAYEEARLKRE 420
           E   VE ++ R+      +Y +KW G  ++ NTW   + L      + + A+++    RE
Sbjct: 818 ERRRVEALIGRQKLKKSFQYEIKWFGKPHKYNTWVSREILLENGFQKFVQAFDDMESSRE 877


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 328 YSNEDNTWEPEDNLDCPELISAY-EEARLK 414
           Y  + N +EP++NL+  EL   + +E+RL+
Sbjct: 60  YQKDKNIYEPKENLEEKELSEGFLDESRLE 89


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
 Frame = +1

Query: 295 GKVEYLLKWKGYSN------EDNTWEPEDNLDCPELISAYEE 402
           G+ E   K  GY N      EDN W+ E    C   +  Y++
Sbjct: 616 GETEEAEKLAGYENAMLRNLEDNHWDEEVQAYCDSSVDEYDD 657


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 47  IIVGIWLPL*KIFLKYXRWTKQW 115
           II   W+ L +  +KY  WTK+W
Sbjct: 24  IIRSGWVMLKEDKMKYLPWTKKW 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,617,658
Number of Sequences: 5004
Number of extensions: 28518
Number of successful extensions: 85
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)