Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G20
         (425 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    47   1e-07
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   0.82 
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   1.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   1.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   2.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   2.5  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      22   2.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   4.4  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   4.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   4.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   4.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   4.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   4.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   4.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   4.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   4.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   4.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   5.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   5.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.6  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 46.8 bits (106), Expect = 1e-07
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = +1

Query: 256 FSVEKVLDRRIKNGKVEYLLKWKGYSNEDNTWEPEDNL-DCPELISAYEEARLK 414
           + VE++L ++   G   YL+KWK +  + NTWEP  NL +C +++  +E  RL+
Sbjct: 244 WEVEQILAKKEIKGVPTYLIKWKNWDLKYNTWEPISNLINCSDILEEFERNRLQ 297


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 0.82
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 367 GYLLAPMYCLRWNN 326
           G +    YCLRWNN
Sbjct: 4   GGMAGQHYCLRWNN 17


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 164 ISYGNYQTEVTMQQPRAQXRTXXRXGXNPKSFLL 265
           + Y N + + +  +PR   +T  + G + K  LL
Sbjct: 36  VVYNNIKRKRSWSRPRESAQTTSKAGIHRKKVLL 69


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 164 ISYGNYQTEVTMQQPRAQXRTXXRXGXNPKSFLL 265
           + Y N + + +  +PR   +T  + G + K  LL
Sbjct: 157 VVYNNIKRKRSWSRPREPAQTTSKAGIHRKKVLL 190


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/13 (69%), Positives = 11/13 (84%), Gaps = 2/13 (15%)
 Frame = -3

Query: 372 VKVIF--WLPCIV 340
           VKV+F  WLPCI+
Sbjct: 332 VKVVFLYWLPCIL 344


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 346 YCLRWNNLSIS 314
           +CLRWNN   S
Sbjct: 7   FCLRWNNYQSS 17


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 346 YCLRWNNLSIS 314
           +CLRWNN   S
Sbjct: 7   FCLRWNNYQSS 17


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 340 DNTWEPEDNLDCPELISAY 396
           D+TW P D L+C   I+++
Sbjct: 162 DHTWWPYDILNCTIHIASW 180


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 273 SRSQN*ERKSRISFEMERLFQRRQYM 350
           SRS++ E   R   + ERL +RR++M
Sbjct: 18  SRSEDSETGLRSRTQEERLRRRREWM 43


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 273 SRSQN*ERKSRISFEMERLFQRRQYM 350
           SRS++ E   R   + ERL +RR++M
Sbjct: 18  SRSEDSETGLRSRTQEERLRRRREWM 43


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 273 SRSQN*ERKSRISFEMERLFQRRQYM 350
           SRS++ E   R   + ERL +RR++M
Sbjct: 18  SRSEDSETGLRSRTQEERLRRRREWM 43


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 273 SRSQN*ERKSRISFEMERLFQRRQYM 350
           SRS++ E   R   + ERL +RR++M
Sbjct: 18  SRSEDSETGLRSRTQEERLRRRREWM 43


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 273 SRSQN*ERKSRISFEMERLFQRRQYM 350
           SRS++ E   R   + ERL +RR++M
Sbjct: 18  SRSEDSETGLRSRTQEERLRRRREWM 43


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 273 SRSQN*ERKSRISFEMERLFQRRQYM 350
           SRS++ E   R   + ERL +RR++M
Sbjct: 18  SRSEDSETGLRSRTQEERLRRRREWM 43


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 273 SRSQN*ERKSRISFEMERLFQRRQYM 350
           SRS++ E   R   + ERL +RR++M
Sbjct: 18  SRSEDSETGLRSRTQEERLRRRREWM 43


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 273 SRSQN*ERKSRISFEMERLFQRRQYM 350
           SRS++ E   R   + ERL +RR++M
Sbjct: 18  SRSEDSETGLRSRTQEERLRRRREWM 43


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +2

Query: 317 NGKVIPTKTIHGSQKITLTVQS*YQHMKKLDS 412
           NG+V+  ++IH S      + S +   ++++S
Sbjct: 298 NGQVLKRESIHNSSNARFLMDSMFDFAERVNS 329


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 61  LATALKNILEILXMDET 111
           + T L+NILE    DET
Sbjct: 514 MGTPLENILESCQQDET 530


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -1

Query: 323 FHFKRYSTFPFLILRSRTFSTENS 252
           FH  +YS  P+ +     F T+ +
Sbjct: 213 FHNDKYSNVPYFLFGDFNFRTDTA 236


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 292 NGKVEYLLKWKGYSN 336
           +G+   +L W GYSN
Sbjct: 303 SGRAFQVLTWLGYSN 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,509
Number of Sequences: 438
Number of extensions: 2127
Number of successful extensions: 24
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)