Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G18
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    28   0.74 
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    26   3.0  

>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 27.9 bits (59), Expect = 0.74
 Identities = 21/86 (24%), Positives = 38/86 (44%)
 Frame = +1

Query: 7   DKVISRSDKIFQIDIAGKIVTVSIDRLKPAYLLSESPTLQGATKPPHSAPDSTYVTRSGR 186
           D+  +  DK+   ++ G+ + VSI R     L       + + +P  S  +S Y  +S  
Sbjct: 151 DQAANAVDKMNNAELDGEELFVSIKRFPFESLHKNHKHYENSYRPSRSQNNSHYNDKSFH 210

Query: 187 RVRFQDFYRP*RSPGGLV*QHDHRRP 264
           R R+       RSPG  + ++  + P
Sbjct: 211 RSRYSRARS--RSPGSNISEYSDQSP 234


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 104 SASPRRCKEPRSLHTAHPTPPTSRDPVEESGSR 202
           +A PR+   P    T H    T R PV  S SR
Sbjct: 190 NAVPRKSSSPPLSSTKHAPQSTERRPVRRSESR 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,731,240
Number of Sequences: 5004
Number of extensions: 33546
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)