Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G17
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   113   2e-26
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    27   2.1  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   2.8  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    26   2.8  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    26   3.7  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   6.4  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   8.4  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  113 bits (271), Expect = 2e-26
 Identities = 50/82 (60%), Positives = 62/82 (75%)
 Frame = +2

Query: 11  RRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIY 190
           RRC+VQ++YAIGVAEPLSI V  YGTS KT  +L+ I++KNFDLRPG +VK L L+ P Y
Sbjct: 299 RRCLVQLSYAIGVAEPLSIFVNTYGTSSKTSAELVEIIRKNFDLRPGVLVKSLKLQTPFY 358

Query: 191 QKTSTYGHFGREGFPWESPKPL 256
             T++YGHF  +  PWE PK L
Sbjct: 359 LSTASYGHFTDQSKPWEQPKEL 380


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 153 LPGRRSKFFFTMERSCCC 100
           LP  R+  FFT+   CCC
Sbjct: 280 LPDERATMFFTIYELCCC 297


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +3

Query: 45  ELQSHSQLPYSTTALRTKHNN-SFSP 119
           +L +HS+LP  T++  +KH + +FSP
Sbjct: 277 DLPTHSRLPSRTSSFSSKHRSVTFSP 302


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/62 (20%), Positives = 31/62 (50%)
 Frame = +3

Query: 225 KGSRGRAPSPSL*NDFRPEALCKYYTSIYYKLLIYYVCHCRKDAKLSRAFVSLXELMYVS 404
           K   G+ P+  L  ++  + L  +   +     +Y+V +  +   L + ++SL  +M+VS
Sbjct: 226 KNMCGKNPTSELPTNYSDKTLTLWENELSSMRKVYFVKYKTEYEFLQKRYLSLARIMFVS 285

Query: 405 RE 410
           ++
Sbjct: 286 KK 287


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 89  SHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIYQKTSTY 208
           S +  +  L+ + K  +  P   +    LRA +Y+K+  Y
Sbjct: 18  SKRKFEDALTFITKTIEQEPNPTIDLFELRAQVYEKSGQY 57


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 390 IHXKRQTPATIWRPSYNDTRSR 325
           +H + QTP  +WR  Y+   S+
Sbjct: 220 LHVEHQTPENLWRLPYSSFHSK 241


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 163 RIEPTSADISKNKYLRTLWPGRVPVGEPQAPHCRMTSD 276
           RIE  SA +  + Y+   WPG   +G    P    TSD
Sbjct: 325 RIE-VSASLGGSPYIPGFWPGIWTIGNLVRPGYLATSD 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,738
Number of Sequences: 5004
Number of extensions: 47971
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)