Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G17
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0264 + 2030080-2031270                                           93   2e-19
01_03_0090 - 12347165-12348349                                         91   5e-19
01_02_0051 - 10655867-10657057                                         89   1e-18
03_05_0591 + 25924907-25925518                                         30   1.2  
01_06_0851 + 32455364-32458050,32458883-32458922                       28   4.8  
04_03_0060 - 10511421-10512494                                         27   6.4  
01_06_0428 + 29291298-29292014,29292094-29292237,29292338-29292721     27   6.4  
08_01_0951 - 9436319-9436372,9436536-9436622,9436700-9436728,943...    27   8.5  

>05_01_0264 + 2030080-2031270
          Length = 396

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 47/87 (54%), Positives = 59/87 (67%), Gaps = 5/87 (5%)
 Frame = +2

Query: 11  RRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRA--- 181
           RRC+VQV+YAIGV EPLS+ V  YGT     +++L IVK+NFD RPG I+  L+L+    
Sbjct: 303 RRCIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKGGN 362

Query: 182 PIYQKTSTYGHFGRE--GFPWESPKPL 256
             Y KT+ YGHFGR+   F WE  KPL
Sbjct: 363 GRYLKTAAYGHFGRDDPDFTWEVVKPL 389


>01_03_0090 - 12347165-12348349
          Length = 394

 Score = 91.1 bits (216), Expect = 5e-19
 Identities = 47/89 (52%), Positives = 59/89 (66%), Gaps = 4/89 (4%)
 Frame = +2

Query: 11  RRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLR--AP 184
           RRC+VQV+YAIGV EPLS+ V  YGT     +++L IVK+NFD RPG +   L+L+    
Sbjct: 302 RRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMMTINLDLKRGGN 361

Query: 185 IYQKTSTYGHFGRE--GFPWESPKPLIVE 265
            + KT+ YGHFGRE   F WE  KPL  E
Sbjct: 362 RFIKTAAYGHFGREDPDFTWEVVKPLKYE 390


>01_02_0051 - 10655867-10657057
          Length = 396

 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 47/87 (54%), Positives = 57/87 (65%), Gaps = 5/87 (5%)
 Frame = +2

Query: 11  RRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRA--- 181
           RRC+VQV+YAIGV EPLS+ V  YGT     +++L IV +NFD RPG I+  L+L     
Sbjct: 303 RRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILRIVTENFDFRPGMIIINLDLMRGGN 362

Query: 182 PIYQKTSTYGHFGRE--GFPWESPKPL 256
             Y KT+ YGHFGRE   F WE  KPL
Sbjct: 363 GRYLKTAAYGHFGREDPDFTWEVVKPL 389


>03_05_0591 + 25924907-25925518
          Length = 203

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 13  PLHGSGRIRHWSCRATLNYRIRLRHFAQNTTTASLHCKEE 132
           P   +GR+R   CRA++ YR+   H+ +   T ++    E
Sbjct: 89  PESETGRLRSGCCRASVGYRVAHAHWGRGVATRAVRAVAE 128


>01_06_0851 + 32455364-32458050,32458883-32458922
          Length = 908

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 410 TPGMELWYCGKENPPSSYSCVNGIQ 484
           TP MEL +  ++  P++Y+ VNGI+
Sbjct: 179 TPTMELTFTPEKGHPNAYAFVNGIE 203


>04_03_0060 - 10511421-10512494
          Length = 357

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 4   RGPPLHGSGRIRHWSCRATLNYRIRLRHFAQNTTTASLHCKEEL 135
           R P    +G +R   CRA++ YR+   H+ +   T ++    E+
Sbjct: 262 REPDESETGGLRSRCCRASVGYRVAHVHWGRGVVTRAVRATAEV 305


>01_06_0428 + 29291298-29292014,29292094-29292237,29292338-29292721
          Length = 414

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 189 YIGARRFNSLTILPGRRSKFFFTMERSCCCVLCE 88
           YIG  RF +   LP   + F   +E   CCVL E
Sbjct: 101 YIGVWRFPNTAGLPQCSTAFPHLLELGLCCVLME 134


>08_01_0951 -
           9436319-9436372,9436536-9436622,9436700-9436728,
           9437447-9438044
          Length = 255

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 297 YTSIYYKLLIYYVCHCRKDAKLSRAFVSL 383
           +TS  Y  +I+Y+  CR    LSR F+ +
Sbjct: 224 HTSYRYISIIWYIYRCRDCDNLSRKFIGM 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,124,735
Number of Sequences: 37544
Number of extensions: 318496
Number of successful extensions: 744
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)