Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G17
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41009-3|AAO44916.1|  353|Caenorhabditis elegans Hypothetical pr...   117   4e-27
U41009-2|AAA82279.1|  404|Caenorhabditis elegans Hypothetical pr...   117   4e-27
U41009-4|AAA82280.1|  404|Caenorhabditis elegans Hypothetical pr...   114   4e-26
AL110479-11|CAB54357.1|  363|Caenorhabditis elegans Hypothetical...   114   4e-26
AL110479-10|CAD56249.1|  345|Caenorhabditis elegans Hypothetical...   114   4e-26
U56963-10|AAM97949.1|  353|Caenorhabditis elegans Temporarily as...   108   3e-24
U56963-9|AAB38126.2|  404|Caenorhabditis elegans Temporarily ass...   108   3e-24
Z81485-1|CAB03975.1|  403|Caenorhabditis elegans Hypothetical pr...   107   4e-24
Z81506-10|CAB04123.2|  270|Caenorhabditis elegans Hypothetical p...    28   3.3  
AL023836-2|CAC42371.1|  270|Caenorhabditis elegans Hypothetical ...    28   3.3  
AC024815-1|ABB88220.1|  344|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>U41009-3|AAO44916.1|  353|Caenorhabditis elegans Hypothetical
           protein C06E7.3b protein.
          Length = 353

 Score =  117 bits (282), Expect = 4e-27
 Identities = 50/82 (60%), Positives = 65/82 (79%)
 Frame = +2

Query: 11  RRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIY 190
           RRC+VQV+YAIGVA+PLS+ VF +GTS  +++ LL+IV  NFDLRPGKI+K L+L+ PIY
Sbjct: 249 RRCLVQVSYAIGVAKPLSVMVFSFGTSALSEEDLLTIVNDNFDLRPGKIIKNLDLKRPIY 308

Query: 191 QKTSTYGHFGREGFPWESPKPL 256
           + T+  GHFG   FPWE P+ L
Sbjct: 309 EPTAENGHFGHNNFPWEQPRNL 330


>U41009-2|AAA82279.1|  404|Caenorhabditis elegans Hypothetical
           protein C06E7.3a protein.
          Length = 404

 Score =  117 bits (282), Expect = 4e-27
 Identities = 50/82 (60%), Positives = 65/82 (79%)
 Frame = +2

Query: 11  RRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIY 190
           RRC+VQV+YAIGVA+PLS+ VF +GTS  +++ LL+IV  NFDLRPGKI+K L+L+ PIY
Sbjct: 300 RRCLVQVSYAIGVAKPLSVMVFSFGTSALSEEDLLTIVNDNFDLRPGKIIKNLDLKRPIY 359

Query: 191 QKTSTYGHFGREGFPWESPKPL 256
           + T+  GHFG   FPWE P+ L
Sbjct: 360 EPTAENGHFGHNNFPWEQPRNL 381


>U41009-4|AAA82280.1|  404|Caenorhabditis elegans Hypothetical
           protein C06E7.1a protein.
          Length = 404

 Score =  114 bits (274), Expect = 4e-26
 Identities = 49/85 (57%), Positives = 65/85 (76%)
 Frame = +2

Query: 11  RRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIY 190
           RRC+VQV+YAIGVA+PLS+ VF +GTS   + +LL IV  NFDLRPG I+K+L+L+ PIY
Sbjct: 300 RRCLVQVSYAIGVAKPLSVMVFSFGTSALNEGELLKIVNDNFDLRPGMIIKDLDLKKPIY 359

Query: 191 QKTSTYGHFGREGFPWESPKPLIVE 265
           + T+  GHFG   FPWE P+ L ++
Sbjct: 360 EPTAENGHFGHNEFPWEQPRHLQID 384


>AL110479-11|CAB54357.1|  363|Caenorhabditis elegans Hypothetical
           protein Y105C5B.12b protein.
          Length = 363

 Score =  114 bits (274), Expect = 4e-26
 Identities = 49/85 (57%), Positives = 65/85 (76%)
 Frame = +2

Query: 11  RRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIY 190
           RRC+VQV+YAIGVA+PLS+ VF +GTS   + +LL IV  NFDLRPG I+K+L+L+ PIY
Sbjct: 259 RRCLVQVSYAIGVAKPLSVMVFSFGTSALNEGELLKIVNDNFDLRPGMIIKDLDLKKPIY 318

Query: 191 QKTSTYGHFGREGFPWESPKPLIVE 265
           + T+  GHFG   FPWE P+ L ++
Sbjct: 319 EPTAENGHFGHNEFPWEQPRHLQID 343


>AL110479-10|CAD56249.1|  345|Caenorhabditis elegans Hypothetical
           protein Y105C5B.12a protein.
          Length = 345

 Score =  114 bits (274), Expect = 4e-26
 Identities = 49/85 (57%), Positives = 65/85 (76%)
 Frame = +2

Query: 11  RRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIY 190
           RRC+VQV+YAIGVA+PLS+ VF +GTS   + +LL IV  NFDLRPG I+K+L+L+ PIY
Sbjct: 241 RRCLVQVSYAIGVAKPLSVMVFSFGTSALNEGELLKIVNDNFDLRPGMIIKDLDLKKPIY 300

Query: 191 QKTSTYGHFGREGFPWESPKPLIVE 265
           + T+  GHFG   FPWE P+ L ++
Sbjct: 301 EPTAENGHFGHNEFPWEQPRHLQID 325


>U56963-10|AAM97949.1|  353|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 32, isoform b protein.
          Length = 353

 Score =  108 bits (259), Expect = 3e-24
 Identities = 47/85 (55%), Positives = 62/85 (72%)
 Frame = +2

Query: 11  RRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIY 190
           RRC+VQV+YAIGVA+PLS+ VF +GTS   + +LL IV  NFDLRPG I+K L+L+  IY
Sbjct: 249 RRCLVQVSYAIGVAKPLSVMVFSFGTSALNEAELLKIVNDNFDLRPGMIIKNLDLKRAIY 308

Query: 191 QKTSTYGHFGREGFPWESPKPLIVE 265
           + T+  GHFG   FPWE  + L ++
Sbjct: 309 EPTAENGHFGHNDFPWEQARKLKID 333


>U56963-9|AAB38126.2|  404|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 32, isoform a protein.
          Length = 404

 Score =  108 bits (259), Expect = 3e-24
 Identities = 47/85 (55%), Positives = 62/85 (72%)
 Frame = +2

Query: 11  RRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIY 190
           RRC+VQV+YAIGVA+PLS+ VF +GTS   + +LL IV  NFDLRPG I+K L+L+  IY
Sbjct: 300 RRCLVQVSYAIGVAKPLSVMVFSFGTSALNEAELLKIVNDNFDLRPGMIIKNLDLKRAIY 359

Query: 191 QKTSTYGHFGREGFPWESPKPLIVE 265
           + T+  GHFG   FPWE  + L ++
Sbjct: 360 EPTAENGHFGHNDFPWEQARKLKID 384


>Z81485-1|CAB03975.1|  403|Caenorhabditis elegans Hypothetical
           protein C49F5.1 protein.
          Length = 403

 Score =  107 bits (257), Expect = 4e-24
 Identities = 45/82 (54%), Positives = 64/82 (78%)
 Frame = +2

Query: 11  RRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIY 190
           +R +VQ++YAIG+A+P+S+ V+ +GTS  T ++L  IV+ +FDL PGKI+KEL+L+ PIY
Sbjct: 299 KRVLVQLSYAIGIAKPISVLVYAFGTSPLTDEELHQIVEDSFDLTPGKIIKELDLKRPIY 358

Query: 191 QKTSTYGHFGREGFPWESPKPL 256
           +KT+  GHFG   FPWE PK L
Sbjct: 359 EKTAENGHFGHSEFPWEQPKAL 380


>Z81506-10|CAB04123.2|  270|Caenorhabditis elegans Hypothetical
           protein F16H6.10 protein.
          Length = 270

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 29  VAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIV 160
           V  ++ V   LSIT+ +  + +KT    L  +K+  DLRP  ++
Sbjct: 81  VLSSMRVLSHLSITISEESSLNKTDVTFLKHLKRILDLRPSSLI 124


>AL023836-2|CAC42371.1|  270|Caenorhabditis elegans Hypothetical
           protein F16H6.10 protein.
          Length = 270

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 29  VAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIV 160
           V  ++ V   LSIT+ +  + +KT    L  +K+  DLRP  ++
Sbjct: 81  VLSSMRVLSHLSITISEESSLNKTDVTFLKHLKRILDLRPSSLI 124


>AC024815-1|ABB88220.1|  344|Caenorhabditis elegans Hypothetical
           protein Y54F10BL.1 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 282 ALCKYYTSIYYKLLIYYVCHCRKDAKLSRAFVSLXELMYV 401
           A C  +  I YK+ I+ +C C  D     +F  L E  ++
Sbjct: 115 ASCIEFDVIAYKVPIFNICICSNDIYFVESFAPLLECFHI 154


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 126  RRTLTCDRVKLLKN*TYERRYIK-KQVLTDTLAGKGSRGRAPSPSL 260
            R  LT + V   +    E  Y K KQVLT+ +    S+G+ P P L
Sbjct: 1856 RAPLTEEEVAAAEQHVSEEVYNKLKQVLTENIVKAVSQGKKPDPQL 1901


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 126  RRTLTCDRVKLLKN*TYERRYIK-KQVLTDTLAGKGSRGRAPSPSL 260
            R  LT + V   +    E  Y K KQVLT+ +    S+G+ P P L
Sbjct: 1856 RAPLTEEEVAAAEQHVSEEVYNKLKQVLTENIVKAVSQGKKPDPQL 1901


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,695,408
Number of Sequences: 27780
Number of extensions: 276522
Number of successful extensions: 628
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)