Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G17
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.1  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   4.1  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   4.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.5  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 357 WRPSYNDTRSRLIVYNIY 304
           W+P   + +  LIVY +Y
Sbjct: 19  WKPLPENLKEDLIVYQVY 36


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 288 CKYYTSIYYKLLIY--YVCHCRKDAKLSRAFVSLXELMYVSREPREWN 425
           C    S+++K  I   +   C+K  ++ +  +      + + EP +WN
Sbjct: 55  CLTPDSVFFKSHITEAFQTQCKKCTEIQKQNLDKLAEWFTTNEPEKWN 102


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 288 CKYYTSIYYKLLIY--YVCHCRKDAKLSRAFVSLXELMYVSREPREWN 425
           C    S+++K  I   +   C+K  ++ +  +      + + EP +WN
Sbjct: 55  CLTPDSVFFKSHITEAFQTQCKKCTEIQKQNLDKLAEWFTTNEPEKWN 102


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 357 WRPSYNDTRSRLIVYNIY 304
           W+P   + +  LIVY +Y
Sbjct: 19  WKPLPENLKEDLIVYQVY 36


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 227 LPGQSVRKYLFFDISALVG 171
           LPG S+   LFF +  L+G
Sbjct: 370 LPGSSIWSCLFFFMLILIG 388


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 227 LPGQSVRKYLFFDISALVG 171
           LPG S+   LFF +  L+G
Sbjct: 423 LPGSSIWSCLFFFMLILIG 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,194
Number of Sequences: 438
Number of extensions: 4147
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)