Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_G16
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 292 3e-80
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 291 7e-80
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 291 9e-80
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 29 0.91
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 27 2.8
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 8.5
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 8.5
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 8.5
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 8.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.5
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 292 bits (717), Expect = 3e-80
Identities = 137/201 (68%), Positives = 158/201 (78%), Gaps = 2/201 (0%)
Frame = +3
Query: 114 RGPKKHLKR*TPLKHGCWT--AGGCTRAASTGPHKLRECLPLVIFLRNRLKYALTGNEVL 287
RGPKKHLKR H +G S GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 3 RGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK 62
Query: 288 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 467
I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYK
Sbjct: 63 AILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYK 122
Query: 468 LCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCM 647
LCKV+RV G K VP+LVTHDGRT+RYPDPLIKVND+++L++ TNKI FIKFD+ M
Sbjct: 123 LCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVM 182
Query: 648 ITGGRNLGRVGTIVSRERHPG 710
+TGGRN+GRVGTIV RE H G
Sbjct: 183 VTGGRNMGRVGTIVHREHHLG 203
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 291 bits (714), Expect = 7e-80
Identities = 136/201 (67%), Positives = 158/201 (78%), Gaps = 2/201 (0%)
Frame = +3
Query: 114 RGPKKHLKR*TPLKHGCWT--AGGCTRAASTGPHKLRECLPLVIFLRNRLKYALTGNEVL 287
RGPKKHLKR H +G S GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 3 RGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK 62
Query: 288 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 467
I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYK
Sbjct: 63 AILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYK 122
Query: 468 LCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCM 647
LCKV+RV G K VP+LVTHDGRT+RYPDPLIKVND+++L++ TNKI FIKFD+ M
Sbjct: 123 LCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVM 182
Query: 648 ITGGRNLGRVGTIVSRERHPG 710
+TGGRN+GRVGTIV RE H G
Sbjct: 183 VTGGRNMGRVGTIVHREHHLG 203
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 291 bits (713), Expect = 9e-80
Identities = 136/201 (67%), Positives = 158/201 (78%), Gaps = 2/201 (0%)
Frame = +3
Query: 114 RGPKKHLKR*TPLKHGCWT--AGGCTRAASTGPHKLRECLPLVIFLRNRLKYALTGNEVL 287
RGPKKHLKR H +G S GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 3 RGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK 62
Query: 288 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 467
I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYK
Sbjct: 63 AILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYK 122
Query: 468 LCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCM 647
LCKV+RV G K VP+LVTHDGRT+RYPDPLIKVND+++L++ TNKI FIKFD+ M
Sbjct: 123 LCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVM 182
Query: 648 ITGGRNLGRVGTIVSRERHPG 710
+TGGRN+GRVGTIV RE H G
Sbjct: 183 VTGGRNMGRVGTIVHREHHLG 203
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 28.7 bits (61), Expect = 0.91
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 560 HQGERLGAARHLHQQDHGLHQVRLRQPLHD 649
H G LGA +H H + G H V P++D
Sbjct: 175 HHGPTLGAKQHSHSHEDGAHGVH-EHPVYD 203
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 561 IKVNDSVQLDISTNKIMDFIKFDSGNLCMITGGRNLGRVGTIVSRERHPGLLR 719
IK+++ S NKI+DF+K D NL + L ++ H +L+
Sbjct: 129 IKLSNKNGQSASKNKILDFLKSDKENLISGDDDQELIDEDELLDESAHDNVLK 181
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.4 bits (53), Expect = 8.5
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -2
Query: 514 YGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGS 335
YGTLL L L + + + +LP ++ +F ++ T+ G + S
Sbjct: 578 YGTLLMHFEPTYALSRLVSFAPPEVTF--SLPELDFLTSVFNFPLALRNTATRILGIILS 635
Query: 334 VR--TFPSTLMRRCFTILSTS 278
+ T S ++ CFTI+STS
Sbjct: 636 TKDSTRISEVLSSCFTIISTS 656
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 496 PVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFS 377
P+ RRT L L+ + W F S + RN +FS
Sbjct: 423 PILKRRTPQELLLSGRDLTPWPQIRRFDSLLARNRGDIFS 462
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = +2
Query: 122 KEALEALNAPKAWMLDSWRV---YARGLDGSPQAARMLAA 232
+EA+ L A AW L W + Y +D PQ +A
Sbjct: 1356 REAIAPLAAAAAWGLGQWNLISEYVSAMDRDPQDKEFFSA 1395
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = -2
Query: 616 KSMILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSL 464
K LL+E+SS E+ T+ S YRS Y L TL L
Sbjct: 661 KIQSLLIELSSHEENLTISSEKIYRSFLSRISEHYNELRNVTTVLGTLDCL 711
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 363 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYL-VTHDGRT 539
+V S+EK N++F + Y+V + + + K+ ++ ++ K+VP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 540 LR 545
L+
Sbjct: 1778 LK 1779
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,157
Number of Sequences: 5004
Number of extensions: 60590
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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