Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_G16
(734 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 244 7e-65
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 32 0.48
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 32 0.48
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr... 31 0.85
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr... 31 0.85
AL117200-3|CAB55048.1| 257|Caenorhabditis elegans Hypothetical ... 30 2.0
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 29 2.6
M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical pr... 29 3.4
M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical pr... 29 3.4
AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical ... 29 3.4
Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 28 6.0
U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein... 28 6.0
U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein... 28 6.0
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 244 bits (596), Expect = 7e-65
Identities = 119/201 (59%), Positives = 143/201 (71%), Gaps = 2/201 (0%)
Frame = +3
Query: 114 RGPKKHLKR*TPLKHGCWTAGGCTRAA--STGPHKLRECLPLVIFLRNRLKYALTGNEVL 287
RGPKKHLKR H G A + GPHKLRE LPL +FLRNRLKYAL E
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61
Query: 288 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 467
KI+ QR+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +K
Sbjct: 62 KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121
Query: 468 LCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCM 647
LCKV+ V T K VP L T DGRT+RYPDP +KVND++ +IST KI D +KF+ GNL
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181
Query: 648 ITGGRNLGRVGTIVSRERHPG 710
+TGGRN+GRVG I RER PG
Sbjct: 182 VTGGRNVGRVGIIGHRERLPG 202
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 31.9 bits (69), Expect = 0.48
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +2
Query: 434 PPYHT*RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAAR--HLHQQD 607
PP H ++ R ++P V G + P P H + G R ++HQQ
Sbjct: 423 PPQHMQAQRLWGGPQPQRMNQPMMAQVGGRPGQYIMGHPPPMHHQMQQGPPRMMYMHQQH 482
Query: 608 HGLHQVRLRQPLHDHRRQE 664
H +HQV Q H+R +
Sbjct: 483 HPMHQVE-DQMQRQHQRMQ 500
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 31.9 bits (69), Expect = 0.48
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +2
Query: 434 PPYHT*RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAAR--HLHQQD 607
PP H ++ R ++P V G + P P H + G R ++HQQ
Sbjct: 423 PPQHMQAQRLWGGPQPQRMNQPMMAQVGGRPGQYIMGHPPPMHHQMQQGPPRMMYMHQQH 482
Query: 608 HGLHQVRLRQPLHDHRRQE 664
H +HQV Q H+R +
Sbjct: 483 HPMHQVE-DQMQRQHQRMQ 500
>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical
protein F11A10.4 protein.
Length = 1646
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = -2
Query: 457 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 299
A+S +R +V+ F I+ + +FS + T +NP+G S R P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214
>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical
protein F11A10.4 protein.
Length = 1646
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = -2
Query: 457 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 299
A+S +R +V+ F I+ + +FS + T +NP+G S R P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214
>AL117200-3|CAB55048.1| 257|Caenorhabditis elegans Hypothetical
protein Y50E8A.5 protein.
Length = 257
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/83 (27%), Positives = 36/83 (43%)
Frame = +3
Query: 144 TPLKHGCWTAGGCTRAASTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 323
TP HG +R A GP + C N +KY L N+ IV V+
Sbjct: 70 TPYAHG-------SRHAENGPVTVTRCQRGETQNMNWVKYGLPVNQGDSIVSDDKCLVEN 122
Query: 324 KVRTDPTYPAGFMDVVSIEKTNE 392
K++ D AG+ ++I +T++
Sbjct: 123 KLKKDGDSCAGYCMTINITRTDD 145
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +3
Query: 420 GRFTIHRITPEEAKYKLCKVRRVATGPKSVP-----YLVTHDGRTLR-YP 551
G+ + R+T E Y+ CK+++ A K VP Y+V H R ++ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical
protein ZK370.3b protein.
Length = 921
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/31 (29%), Positives = 23/31 (74%)
Frame = -1
Query: 326 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 234
+P H ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597
>M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical
protein ZK370.3a protein.
Length = 927
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/31 (29%), Positives = 23/31 (74%)
Frame = -1
Query: 326 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 234
+P H ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597
>AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical
protein Y71A12B.6 protein.
Length = 316
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 415 TSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMR 305
T+ N F FS T S+NP GY+ V TL +
Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272
>Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical
protein ZK678.1 protein.
Length = 719
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 715 RSPGWRSRETMVPTRPRFLPPVIMQRLPESNLM 617
R+P + P+ P+ +PP M++ PE LM
Sbjct: 679 RNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLM 711
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +2
Query: 473 QGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQDHGLHQVRLRQPLHDH 652
+G R PQ P + A P+ Q ++ + +Q H HQ RL+Q
Sbjct: 191 RGCPARSAPQRVPAPPAQQYAPRAPEYPSAQQQQQQREQQQREQQHREHQARLQQHQQQQ 250
Query: 653 RRQE 664
++Q+
Sbjct: 251 QQQQ 254
>U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 715 RSPGWRSRETMVPTRPRFLPPVIMQRLPESNLM 617
R+P + P+ P+ +PP M++ PE LM
Sbjct: 679 RNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLM 711
>U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 715 RSPGWRSRETMVPTRPRFLPPVIMQRLPESNLM 617
R+P + P+ P+ +PP M++ PE LM
Sbjct: 679 RNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLM 711
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,851,552
Number of Sequences: 27780
Number of extensions: 358432
Number of successful extensions: 1104
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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