Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G15
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    83   2e-17
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    27   1.3  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    25   6.8  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 83.0 bits (196), Expect = 2e-17
 Identities = 44/76 (57%), Positives = 55/76 (72%)
 Frame = -3

Query: 430 DKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQIEDASAGDVP 251
           D++VKDL  +LYETALLSSGFTLD+P  +A RI R+I LGL IDE+E   IE+ S   V 
Sbjct: 632 DRSVKDLATILYETALLSSGFTLDDPSAYAQRINRLISLGLSIDEEEEAPIEEISTESV- 690

Query: 250 PLEGDADDASRMEEVD 203
             E +A+  S+MEEVD
Sbjct: 691 AAENNAE--SKMEEVD 704


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 286 IQIEDASAGDVPPLEGDADDASRMEEVD 203
           IQ ++    D PP++ DAD+    EE D
Sbjct: 157 IQWDNPDFDDAPPVQPDADEEEEEEEAD 184


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 221 RCIISVSFQRWDISSTCIFNLDRLILINTKTKLNHP 328
           R +IS++F   D S  C+F +D +I +      N P
Sbjct: 184 RDVISLAFPVLD-SKNCVFIMDEIITVFINNSSNDP 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,615,034
Number of Sequences: 5004
Number of extensions: 27769
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)