Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_G15
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical pr...   101   2e-22
Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical pr...    36   0.010
AL021474-4|CAD54164.1|  445|Caenorhabditis elegans Hypothetical ...    28   3.5  
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical
           protein C47E8.5 protein.
          Length = 702

 Score =  101 bits (242), Expect = 2e-22
 Identities = 55/83 (66%), Positives = 64/83 (77%), Gaps = 4/83 (4%)
 Frame = -3

Query: 439 DKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQIED---- 272
           DKNDK VKDLV+LL+ETALL+SGF+L+EPQ HASRIYRMIKLGL I +DE   IED    
Sbjct: 623 DKNDKTVKDLVVLLFETALLASGFSLEEPQSHASRIYRMIKLGLDIGDDE---IEDSAVP 679

Query: 271 ASAGDVPPLEGDADDASRMEEVD 203
           +S      +EG  +DASRMEEVD
Sbjct: 680 SSCTAEAKIEGAEEDASRMEEVD 702


>Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical
           protein T05E11.3 protein.
          Length = 760

 Score = 36.3 bits (80), Expect = 0.010
 Identities = 22/76 (28%), Positives = 37/76 (48%)
 Frame = -3

Query: 436 KNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQIEDASAGD 257
           + D        LL+ETA L SGF+L +    A RI  +++  L + +D  ++ E      
Sbjct: 682 EEDTTAASTAKLLFETATLRSGFSLQDQVGFADRIEAVLRQSLDVSQDAQVETEQHIEEA 741

Query: 256 VPPLEGDADDASRMEE 209
            P  E +A + + +EE
Sbjct: 742 EP--EPEAAEETTIEE 755


>AL021474-4|CAD54164.1|  445|Caenorhabditis elegans Hypothetical
           protein Y32F6A.5 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 218 ARCIISVSFQRWDISSTCIFNLDRLILINT 307
           ARC   V  Q+W+ ++ C  N++ LI + T
Sbjct: 226 ARCQALVDQQKWEKATNCWGNMENLISVET 255


>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
           protein F54D11.2 protein.
          Length = 1145

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 304 IDEDEPIQIEDASAGDVPPLEGDADDASRMEE 209
           +++DEP    +A + DVP     +D+AS ++E
Sbjct: 115 MNKDEPSTSTEAPSADVPGTSEASDEASEIQE 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,957,620
Number of Sequences: 27780
Number of extensions: 159389
Number of successful extensions: 308
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)