Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_G14
(532 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 133 2e-32
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 31 0.081
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 27 2.3
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo... 27 2.3
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo... 26 4.0
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 25 5.3
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 25 9.3
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ... 25 9.3
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom... 25 9.3
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 133 bits (321), Expect = 2e-32
Identities = 64/143 (44%), Positives = 97/143 (67%), Gaps = 1/143 (0%)
Frame = +2
Query: 104 KEEEDSSGNPYQNLDKTIVLQETRYFNQTPVNPRKCSLILTKVLYLLNQGEKFTVQEATE 283
K+++D + + N+++ V Q+ R FN + ++PRK +L+K+ YL+ GE F ++ATE
Sbjct: 5 KKDDDGDESIFANVNQVTVTQDARAFNSSSISPRKSRRLLSKIAYLIYTGEHFQEKQATE 64
Query: 284 VFFATTKLFQSKDVMLRRMVYLCIKELSTLAQDVIIVTSSLTKD-MTGKEDLYRAAAIRA 460
+FF TKLFQ KD LR+ VY+ IKELS +A+DVI++TSS+ KD TG+E +YR AIR+
Sbjct: 65 LFFGITKLFQHKDPSLRQFVYIIIKELSVVAEDVIMITSSIMKDTATGRETIYRPNAIRS 124
Query: 461 LCSITEPTMLQAIERYMKQAIVD 529
L + + + AIER + IVD
Sbjct: 125 LIRVIDANTVPAIERILTTGIVD 147
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 31.5 bits (68), Expect = 0.081
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 257 KFTVQEATEVFFATTKLFQSKDVMLRRMVYLCIKELSTLAQDVIIVT--SSLTKDMTGKE 430
K+ Q E+F FQ KDV+L + Y + ST A+D++ ++ + L D + E
Sbjct: 174 KYGDQSGLELFVNDKPCFQVKDVILPQGYYFGVSSQSTSAKDLVALSNLNILPPDTSNNE 233
Query: 431 DL 436
+L
Sbjct: 234 NL 235
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 26.6 bits (56), Expect = 2.3
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +1
Query: 370 FGSRCYYSHVFSN*RYDRQRGFVPS----GCYSSSVQYH*TYNVASN 498
FGS+C HV + R + R F PS G S ++ N+ SN
Sbjct: 80 FGSKCALEHVLPDGRKVKTRAFAPSTTAMGSSSQNISAAPMANIISN 126
>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 26.6 bits (56), Expect = 2.3
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Frame = +2
Query: 53 VIKSKKKLQMSSFK--RDKKEEEDSSGNPYQNLDKTIVLQETRYFN--QTPVNPRKCSLI 220
++K + KL+ S K D KE+ S+ P L K +L E + + P S
Sbjct: 15 IVKHQFKLRSFSTKSLNDTKEKAPSALIPVGLLVKPTMLSEVQKPTLWEKLTKPASTSSP 74
Query: 221 LTKVLYLLNQGEKFTVQEATEVFFATTKLFQS 316
+ LLN+ ++ T+Q+ EV KLF S
Sbjct: 75 EQRQKELLNEMKRSTIQDFNEVRRFNGKLFYS 106
>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 59 KSKKKLQMSSFKRDKKEE 112
K KK+L M SFKR K E
Sbjct: 490 KKKKRLSMLSFKRSKNRE 507
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 306 SFVVAKNTSVASWTVNFSPWFNKYRTFVRINEHFRGL 196
SFV + T W FS W+ +F+R ++ + L
Sbjct: 293 SFVQVRGTVPCFWEEQFSSWYGPSISFLRSSQASQSL 329
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 24.6 bits (51), Expect = 9.3
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -2
Query: 513 FIYLSIACNIVGSVILH 463
FI++SI C +GSV+++
Sbjct: 295 FIFISILCGCLGSVLIY 311
>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
Orc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 264
Score = 24.6 bits (51), Expect = 9.3
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 281 EVFFATTKLFQSKDVMLRRMVYLCIKELSTLAQDVI--IVTSSLTKDM 418
E+ TK +KD ++ + YLC K + A + +V + +T DM
Sbjct: 91 EILSPLTKSLAAKDDLMETITYLCTKLGGSTAIPYVKQLVKAVVTNDM 138
>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 304
Score = 24.6 bits (51), Expect = 9.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 259 IHCPRGHRGIFRYYEAI 309
+ C R HR + RY +AI
Sbjct: 204 VDCKRAHRSLLRYIQAI 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,024
Number of Sequences: 5004
Number of extensions: 45663
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -