Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_G14
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664... 178 3e-45
07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548... 161 2e-40
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 30 1.0
07_03_1770 - 29382508-29382591,29382901-29383041,29383134-293835... 29 1.8
03_02_0691 + 10432615-10433109,10433155-10433216,10433526-104335... 29 1.8
02_05_0258 + 27222058-27223198,27223297-27223460,27224399-272245... 29 2.3
04_03_0093 - 11085882-11087339 29 3.1
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272... 28 4.1
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 28 5.4
03_01_0574 + 4243019-4244284 28 5.4
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 27 7.1
05_05_0078 - 22229607-22229685,22229851-22229921,22229992-222300... 27 7.1
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230... 27 9.4
>03_02_0235 +
6644083-6644125,6645218-6645315,6645448-6645498,
6645573-6645686,6645771-6645971,6646047-6646148,
6647245-6647352,6647745-6647995,6648108-6648279,
6648341-6648397,6648555-6648710,6648807-6648857,
6649053-6649193,6649270-6649464,6649534-6649665,
6649768-6649941,6650396-6650635,6650761-6650955
Length = 826
Score = 178 bits (433), Expect = 3e-45
Identities = 90/147 (61%), Positives = 110/147 (74%)
Frame = +2
Query: 92 KRDKKEEEDSSGNPYQNLDKTIVLQETRYFNQTPVNPRKCSLILTKVLYLLNQGEKFTVQ 271
K+D ++ED +P+ ++K VLQE R F+ ++ RKCS ++TK+LYLLNQGE FT
Sbjct: 7 KKDD-DDEDVEYSPFYGIEKGAVLQEARAFHDPQLDARKCSQVITKLLYLLNQGETFTKV 65
Query: 272 EATEVFFATTKLFQSKDVMLRRMVYLCIKELSTLAQDVIIVTSSLTKDMTGKEDLYRAAA 451
EATEVFFA TKLFQSKD LRR+VYL IKELS + +VIIVTSSL KDM K D+YRA A
Sbjct: 66 EATEVFFAVTKLFQSKDAGLRRLVYLMIKELSPSSDEVIIVTSSLMKDMNSKTDMYRANA 125
Query: 452 IRALCSITEPTMLQAIERYMKQAIVDK 532
IR LC I + T+L IERY+KQAIVDK
Sbjct: 126 IRVLCRIIDGTLLTQIERYLKQAIVDK 152
>07_01_0718 +
5484553-5484601,5484836-5484933,5485028-5485078,
5485744-5485857,5485887-5485937,5485938-5486138,
5486240-5486341,5486879-5486986,5487053-5487286,
5488250-5488500,5488592-5488763,5489165-5489320,
5489405-5489455,5489499-5489591,5489814-5490014,
5490105-5490236,5490308-5490481,5490755-5490994,
5491213-5491407
Length = 890
Score = 161 bits (392), Expect = 2e-40
Identities = 89/164 (54%), Positives = 109/164 (66%), Gaps = 17/164 (10%)
Frame = +2
Query: 92 KRDKKEEEDSSGNPYQNLDKTIVLQETRYFNQTPVNPRKCSLILTKVLYLLNQGEKFTVQ 271
K+D +E+ +P+ ++K VLQE R F+ ++ R+C ++TK+LYLLNQG+ FT
Sbjct: 8 KKDDDLDEEEYYSPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKV 67
Query: 272 EATEVFFATTKLFQSKDVMLRRMVYLCIKELSTLAQD-----------------VIIVTS 400
EATEVFFATTKLFQSKD LRRMVYL IKELS A + VIIVTS
Sbjct: 68 EATEVFFATTKLFQSKDAGLRRMVYLMIKELSPSADEFSAVYGSLKVSVLHLLQVIIVTS 127
Query: 401 SLTKDMTGKEDLYRAAAIRALCSITEPTMLQAIERYMKQAIVDK 532
SL KDM K D+YRA AIR LC I + T+L IERY+KQAIVDK
Sbjct: 128 SLMKDMNSKTDMYRANAIRVLCRIIDSTLLTQIERYLKQAIVDK 171
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 270 WTVNFSPWFNKYRTFVR 220
W +NFS W N +R FVR
Sbjct: 587 WIINFSSWVNAHRNFVR 603
>07_03_1770 -
29382508-29382591,29382901-29383041,29383134-29383520,
29383685-29383930,29385396-29385437,29385973-29386461
Length = 462
Score = 29.5 bits (63), Expect = 1.8
Identities = 24/74 (32%), Positives = 33/74 (44%)
Frame = +2
Query: 308 FQSKDVMLRRMVYLCIKELSTLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITEPTM 487
F D+ RR ++ TLA DV + +TKD + A I+A+C TE +
Sbjct: 375 FPLPDIKTRRRIFQIHTSKMTLADDVNLEEFVMTKDE------FSGADIKAIC--TEAGL 426
Query: 488 LQAIERYMKQAIVD 529
L ER MK D
Sbjct: 427 LALRERRMKVTHAD 440
>03_02_0691 +
10432615-10433109,10433155-10433216,10433526-10433565,
10434562-10434807,10435020-10435189,10435323-10435539,
10435615-10435755,10435943-10436026
Length = 484
Score = 29.5 bits (63), Expect = 1.8
Identities = 24/74 (32%), Positives = 33/74 (44%)
Frame = +2
Query: 308 FQSKDVMLRRMVYLCIKELSTLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITEPTM 487
F D+ RR ++ TLA DV + +TKD + A I+A+C TE +
Sbjct: 397 FPLPDIKTRRRIFQIHTSKMTLADDVNLEEFVMTKDE------FSGADIKAIC--TEAGL 448
Query: 488 LQAIERYMKQAIVD 529
L ER MK D
Sbjct: 449 LALRERRMKVTHAD 462
>02_05_0258 +
27222058-27223198,27223297-27223460,27224399-27224575,
27224713-27224761,27224991-27225793
Length = 777
Score = 29.1 bits (62), Expect = 2.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 270 WTVNFSPWFNKYRTFVR 220
W VNFS W N+ R+F++
Sbjct: 583 WIVNFSSWVNEQRSFIK 599
>04_03_0093 - 11085882-11087339
Length = 485
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 507 YLSIACNIVGSVILHRARIAAARYKSSLP 421
+ I C+ V+LH R+ RYK LP
Sbjct: 226 FAMICCHNAAHVVLHTQRLRTLRYKDGLP 254
>01_06_1795 -
39925019-39926029,39926265-39926408,39927200-39927277,
39927722-39927838,39927925-39927981,39928492-39928623,
39928725-39928922,39929364-39929474,39929570-39929785,
39929879-39930064,39930590-39931192
Length = 950
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 302 KLFQSKDVMLRRMVYLCIKELSTLAQD-VIIVTSSLTKDMTGKEDLYRAAAIRALCSITE 478
K+ + + L+R YL + D VI+V +++ KD+ L AA+ A C +
Sbjct: 92 KMTHDESLPLKRTGYLAVSLFLDERHDLVILVVNTIQKDLRSDNYLVVCAALTAACRLIG 151
Query: 479 PTMLQAI 499
+ A+
Sbjct: 152 EEAIPAV 158
>06_03_0924 - 25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +2
Query: 59 KSKKKLQMSSF-KRDKKEEEDSSGNPYQ 139
K++K +++SSF KRD++++ SG P Q
Sbjct: 1566 KTRKIVELSSFEKRDREDDNGFSGQPIQ 1593
>03_01_0574 + 4243019-4244284
Length = 421
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +2
Query: 143 LDKTIVLQETRYFNQTPVNPRKCSLILTK---VLYLLNQGEKFTV 268
L+K +V+ YF + V P+K +L K + Y+ +G++F+V
Sbjct: 280 LEKRLVIDHLTYFCREFVMPQKLMRLLLKHYGIFYVYERGKRFSV 324
>11_01_0471 -
3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/40 (22%), Positives = 22/40 (55%)
Frame = +2
Query: 380 DVIIVTSSLTKDMTGKEDLYRAAAIRALCSITEPTMLQAI 499
++I++ +L ++ + R +R LC + EP +L+ +
Sbjct: 94 EMILICQNLRNNLQHPNEYIRGVTLRFLCRLNEPELLEPL 133
>05_05_0078 -
22229607-22229685,22229851-22229921,22229992-22230058,
22230195-22230263,22230376-22230526,22230915-22230990,
22231466-22231569,22231676-22231772,22231845-22231931,
22232016-22232102,22232190-22232279,22232405-22232482,
22232595-22232759,22232898-22233048,22233610-22233887,
22234072-22234233,22234324-22234560,22234633-22234704,
22235187-22235273,22235498-22235557
Length = 755
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 332 RRMVYLCIKELSTLAQDVIIVTSSLTKDMTGKEDL-YRAAAIRALCSITEPTM 487
+R V + +KEL++L +VI+VTS G++ L YR + + +P M
Sbjct: 77 QRKVAMQVKELNSLGYEVILVTSGAVG--VGRQRLRYRKLVNSSFADLQKPQM 127
>01_01_1236 -
10020837-10021041,10021746-10021831,10022552-10023061,
10023914-10025965
Length = 950
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/40 (22%), Positives = 23/40 (57%)
Frame = +2
Query: 380 DVIIVTSSLTKDMTGKEDLYRAAAIRALCSITEPTMLQAI 499
++I++ +L ++ + R +R LC ++EP +L+ +
Sbjct: 93 EMILICQNLRNNLHHPNEYIRGVTLRFLCRLSEPEVLEPL 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,497,034
Number of Sequences: 37544
Number of extensions: 254257
Number of successful extensions: 732
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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